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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-11-27 15:43:22 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-12-03 16:59:54 +0100 |
| commit | 9fda4a5ac66c248d7cdb5370da74cb944c1784bc (patch) | |
| tree | 14d00cb67707f4c98ba18899e6aa611a0e3b17f4 | |
| parent | ecc52f514d73d4c85a5ce358c00c2445cc75c044 (diff) | |
| download | guix-9fda4a5ac66c248d7cdb5370da74cb944c1784bc.tar.gz guix-9fda4a5ac66c248d7cdb5370da74cb944c1784bc.zip | |
gnu: r-category: Add missing inputs.
* gnu/packages/bioconductor.scm (r-category)[arguments]: Add phase
'delete-bad-tests; skip building vignettes.
[native-inputs]: Add r-all, r-geneplotter, r-hgu95av2-db, r-karyoploter,
r-keggrest, r-lattice, r-limma, r-org-sc-sgd-db, and r-rcolorbrewer.
[properties]: Tell updater to ignore r-gostats.
Change-Id: I186b7a92437a20f85960bd605ae25ed5c29bf5b2
| -rw-r--r-- | gnu/packages/bioconductor.scm | 25 |
1 files changed, 23 insertions, 2 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2d3cf7b323..96c91de376 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7999,8 +7999,20 @@ genome data packages and support for efficient SNP representation.") (sha256 (base32 "0s65rfk9sw02qdqk7jhbkjybx1sm0hq0impdcxyypxbg77db5wk2")))) - (properties `((upstream-name . "Category"))) + (properties + `((upstream-name . "Category") + (updater-ignored-native-inputs . ("r-gostats")))) (build-system r-build-system) + (arguments + (list + ;; Vignettes attempt to connect to rest.kegg.jp. + #:test-types '(list "tests") + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'delete-bad-tests + (lambda _ + ;; These tests need r-gostats, which depends on this package. + (delete-file "inst/UnitTests/hyperGTest_test.R")))))) (propagated-inputs (list r-annotate r-annotationdbi @@ -8012,7 +8024,16 @@ genome data packages and support for efficient SNP representation.") r-gseabase r-matrix r-rbgl)) - (native-inputs (list r-runit)) + (native-inputs (list r-all + r-geneplotter + r-hgu95av2-db + r-karyoploter + r-keggrest + r-lattice + r-limma + r-org-sc-sgd-db + r-rcolorbrewer + r-runit)) (home-page "https://bioconductor.org/packages/Category") (synopsis "Category analysis") (description |