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author | Ricardo Wurmus <rekado@elephly.net> | 2023-03-30 14:26:40 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2023-03-30 14:26:40 +0200 |
commit | 96e81b18b9dd6a7fdc2d178ee8d1542f8d55826f (patch) | |
tree | cff3b5dd55eda62ce66fe6230f0b39dba58a9b9c | |
parent | 418811783ee1f3455d6394f17ffe5e221eca5e0f (diff) | |
download | guix-96e81b18b9dd6a7fdc2d178ee8d1542f8d55826f.tar.gz guix-96e81b18b9dd6a7fdc2d178ee8d1542f8d55826f.zip |
gnu: Add r-champ.
* gnu/packages/bioconductor.scm (r-champ): New variable.
-rw-r--r-- | gnu/packages/bioconductor.scm | 62 |
1 files changed, 62 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b61fcaa051..5a59ab86eb 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5900,6 +5900,68 @@ genome data packages and support for efficient SNP representation.") analysis.") (license license:artistic2.0))) +(define-public r-champ + (package + (name "r-champ") + (version "2.28.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ChAMP" version)) + (sha256 + (base32 + "10ss0a3miqrx92vy1r1h5rv3mnjn4iyl32q86s0x59d3fvqp2cx1")))) + (properties `((upstream-name . "ChAMP"))) + (build-system r-build-system) + (propagated-inputs + (list r-bumphunter + r-champdata + r-combinat + r-dendextend + r-dmrcate + r-dnacopy + r-doparallel + r-dt + r-genomicranges + r-ggplot2 + r-globaltest + r-goseq + r-hmisc + r-illumina450probevariants-db + r-illuminahumanmethylation450kmanifest + r-illuminahumanmethylationepicanno-ilm10b4-hg19 + r-illuminahumanmethylationepicmanifest + r-illuminaio + r-impute + r-isva + r-kpmt + r-limma + r-marray + r-matrixstats + r-minfi + r-missmethyl + r-plotly + r-plyr + r-preprocesscore + r-prettydoc + r-quadprog + r-qvalue + r-rcolorbrewer + r-rmarkdown + r-rpmm + r-shiny + r-shinythemes + r-sva + r-watermelon)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/ChAMP") + (synopsis + "Chip analysis methylation pipeline for Illumina HumanMethylation450 and EPIC") + (description + "The package includes quality control metrics, a selection of +normalization methods and novel methods to identify differentially methylated +regions and to highlight copy number alterations.") + (license license:gpl3))) + (define-public r-chipseeker (package (name "r-chipseeker") |