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authorRicardo Wurmus <rekado@elephly.net>2024-01-05 18:21:06 +0100
committerRicardo Wurmus <rekado@elephly.net>2024-01-05 18:21:06 +0100
commit9068dc9f29a81f8f061f66e1b1105361cea7242d (patch)
treeabea6dac6f472188bcdf12c075503602e1a03fce
parent657fd534fb3ba3daf3852780f5f1eb9be50e6842 (diff)
downloadguix-9068dc9f29a81f8f061f66e1b1105361cea7242d.tar.gz
guix-9068dc9f29a81f8f061f66e1b1105361cea7242d.zip
gnu: Add bustools.
* gnu/packages/bioinformatics.scm (bustools): New variable. Change-Id: I24a936ad1d630663a41855a833e35fb9caa0155c
-rw-r--r--gnu/packages/bioinformatics.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a363298386..7dbebcf3da 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -575,6 +575,30 @@ BED, GFF/GTF, VCF.")
whole-genome bisulfite sequencing (WGBS) reads from directional protocol.")
(license license:asl2.0)))
+(define-public bustools
+ (package
+ (name "bustools")
+ (version "0.43.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/BUStools/bustools")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "068kjlc4d528269nl5mc3j8h2c95r1v545d3fi1iw1ckg8rba0hg"))))
+ (build-system cmake-build-system)
+ (arguments (list #:tests? #f)) ;no test target
+ (inputs (list zlib))
+ (home-page "https://bustools.github.io")
+ (synopsis "Tools for working with BUS files")
+ (description "bustools is a program for manipulating BUS files for single
+cell RNA-Seq datasets. It can be used to error correct barcodes, collapse
+UMIs, produce gene count or transcript compatibility count matrices, and is useful
+for many other tasks.")
+ (license license:bsd-2)))
+
(define-public cellsnp-lite
;; Last release is from November 2021 and does not contain fixes.
(let ((commit "0885d746b0b1ea65c8ef92f8943ca7669ca9734a")