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| author | Ricardo Wurmus <rekado@elephly.net> | 2025-05-13 16:55:18 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2025-05-13 17:01:01 +0200 |
| commit | 8b2426a1a1ea30a25df1731238bc9cdd0a40121f (patch) | |
| tree | 30800d0533e7626624117638c5f3ae41d2fb67b1 | |
| parent | ee4f2236e01015190cbf29acc94fb138d039d42a (diff) | |
| download | guix-8b2426a1a1ea30a25df1731238bc9cdd0a40121f.tar.gz guix-8b2426a1a1ea30a25df1731238bc9cdd0a40121f.zip | |
gnu: Add r-anglemania.
* gnu/packages/bioinformatics.scm (r-anglemania): New variable.
Change-Id: I14e8df223af809cb2a0bb2e569c9a6976de35e6b
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a66f4518ae..e6a89099e8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -731,6 +731,48 @@ alignment-free, it runs much faster and also easier to use.") and utilities for PacBio C++ applications.") (license license:bsd-3))) +(define-public r-anglemania + (let ((commit "f27399fb947adfa0de6134493e737658ca591af5") + (revision "1")) + (package + (name "r-anglemania") + (version (git-version "0.99.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BIMSBbioinfo/anglemania/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "05s60wba5jbg81lflifaz9yykl86f3is1y4b63c7rp6vmd5jf5y3")))) + (properties `((upstream-name . "anglemania"))) + (build-system r-build-system) + (propagated-inputs (list r-bigparallelr + r-bigstatsr + r-checkmate + r-digest + r-dplyr + r-magrittr + r-matrix + r-pbapply + r-rcpp + r-rmio + r-s4vectors + r-seurat + r-seuratobject + r-singlecellexperiment + r-tidyr + r-withr)) + (native-inputs (list r-knitr r-testthat)) + (home-page "https://github.com/BIMSBbioinfo/anglemania/") + (synopsis "Feature extraction for scRNA-seq dataset integration") + (description + "Anglemania extracts genes from multi-batch @code{scRNA-seq} +experiments for downstream dataset integration. It improves conventional +usage of highly-variable genes for integration tasks.") + (license license:gpl3+)))) + (define-public r-anndatar (let ((commit "5c3eb7e498d0d9bf1c522ad66f4eb8ad277238b6") (revision "1")) |