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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2017-08-30 17:12:23 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-08-30 17:32:00 +0200 |
| commit | 799247d2d97c2f4ae281b35e091f587988fb699a (patch) | |
| tree | 24d98465a5fa63289775d611334390cbe2bed490 | |
| parent | 4a7d2009c858391ec57ee571468b13fb3fdeab52 (diff) | |
| download | guix-799247d2d97c2f4ae281b35e091f587988fb699a.tar.gz guix-799247d2d97c2f4ae281b35e091f587988fb699a.zip | |
gnu: multiqc: Update to 1.2.
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.2.
[source]: Remove patches.
[arguments]: Remove to enable tests.
[propagated-inputs]: Add python-spectra, python-requests, python-markdown,
python-lzstring.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 13 | ||||
| -rw-r--r-- | gnu/packages/patches/multiqc-fix-git-subprocess-error.patch | 16 |
3 files changed, 6 insertions, 24 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index 10d4ab1143..306a16911d 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -853,7 +853,6 @@ dist_patch_DATA = \ %D%/packages/patches/mozjs38-shell-version.patch \ %D%/packages/patches/mozjs38-tracelogger.patch \ %D%/packages/patches/mozjs38-version-detection.patch \ - %D%/packages/patches/multiqc-fix-git-subprocess-error.patch \ %D%/packages/patches/mumps-build-parallelism.patch \ %D%/packages/patches/mupdf-build-with-openjpeg-2.1.patch \ %D%/packages/patches/mupen64plus-ui-console-notice.patch \ diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c5157046ab..d0df0ee41a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8575,25 +8575,24 @@ replacement for strverscmp.") (define-public multiqc (package (name "multiqc") - (version "0.9") + (version "1.2") (source (origin (method url-fetch) (uri (pypi-uri "multiqc" version)) (sha256 (base32 - "12gs1jw2jrxrij529rnl5kaqxfcqn15yzcsggxkfhdx634ml0cny")) - (patches (search-patches "multiqc-fix-git-subprocess-error.patch")))) + "032svgym67k2ds7wp0cxzv79gi30yrdl45zbqn74lni3dk04qm33")))) (build-system python-build-system) - (arguments - ;; Tests are to be introduced in the next version, see - ;; https://github.com/ewels/MultiQC/issues/376 - `(#:tests? #f)) (propagated-inputs `(("python-jinja2" ,python-jinja2) ("python-simplejson" ,python-simplejson) ("python-pyyaml" ,python-pyyaml) ("python-click" ,python-click) + ("python-spectra" ,python-spectra) + ("python-requests" ,python-requests) + ("python-markdown" ,python-markdown) + ("python-lzstring" ,python-lzstring) ("python-matplotlib" ,python-matplotlib) ("python-numpy" ,python-numpy) ;; MultQC checks for the presence of nose at runtime. diff --git a/gnu/packages/patches/multiqc-fix-git-subprocess-error.patch b/gnu/packages/patches/multiqc-fix-git-subprocess-error.patch deleted file mode 100644 index 87be6142f4..0000000000 --- a/gnu/packages/patches/multiqc-fix-git-subprocess-error.patch +++ /dev/null @@ -1,16 +0,0 @@ -Without this patch, the incorrect exception is caught when 'git' is not in -PATH. See https://github.com/ewels/MultiQC/pull/377. - -diff --git a/multiqc/utils/config.py b/multiqc/utils/config.py -index 01fa554..4a11793 100755 ---- a/multiqc/utils/config.py -+++ b/multiqc/utils/config.py -@@ -28,7 +28,7 @@ try: - git_hash = subprocess.check_output(['git', 'rev-parse', 'HEAD'], stderr=subprocess.STDOUT) - git_hash_short = git_hash[:7] - version = '{} ({})'.format(version, git_hash_short) --except subprocess.CalledProcessError: -+except (subprocess.CalledProcessError, FileNotFoundError): - pass - os.chdir(cwd) - |