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| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-06-09 16:56:34 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-06-09 17:09:38 +0200 |
| commit | 74443c30f3e20655a046c0d3ea236822ef130968 (patch) | |
| tree | ca5e982432e1d5c5e728e7b50f28c9ec38ac115d | |
| parent | c348b1be3891e6eb47bbdd9fc1587aba2b6ab0b7 (diff) | |
| download | guix-74443c30f3e20655a046c0d3ea236822ef130968.tar.gz guix-74443c30f3e20655a046c0d3ea236822ef130968.zip | |
gnu: Add python-mudata.
* gnu/packages/bioinformatics.scm (python-mudata): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 38c5195146..9e356cba5d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3357,6 +3357,32 @@ It provides convenience functions to load and visualize factor models trained with MOFA+ in Python.") (license license:expat)))) +(define-public python-mudata + (package + (name "python-mudata") + (version "0.2.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/scverse/mudata") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "02h0k1q57589r0hdv8nwg1vk7g2ljvn5g66c47fy5gdilbm3gjws")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-anndata python-h5py python-pandas)) + (native-inputs + (list python-flit-core python-numpy python-pytest python-zarr)) + (home-page "https://github.com/scverse/mudata") + (synopsis "Python package for multi-omics data analysis") + (description + "Mudata is a Python package for multi-omics data analysis. +It is designed to provide functionality to load, process, and store multimodal +omics data.") + (license license:bsd-3))) + (define-public python-pyega3 (package (name "python-pyega3") |