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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-23 12:46:31 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-10-27 16:40:18 +0200 |
| commit | 70d30096b38f4d1d23d84aaae34400e3d8abd797 (patch) | |
| tree | 31c295ae5af8cea901cc047b05766f26a4dc0ecb | |
| parent | 599655dc496491c2569689811d667df6ffeb396c (diff) | |
| download | guix-70d30096b38f4d1d23d84aaae34400e3d8abd797.tar.gz guix-70d30096b38f4d1d23d84aaae34400e3d8abd797.zip | |
gnu: Add r-atsnp.
* gnu/packages/bioconductor.scm (r-atsnp): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ad20602ff6..6e72a8e1af 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2317,6 +2317,39 @@ reproducible gene expression signatures capable of accurately distinguishing tumor samples from healthy controls.") (license license:artistic2.0))) +(define-public r-atsnp + (package + (name "r-atsnp") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "atSNP" version)) + (sha256 + (base32 + "0dmv34xqwr3l2rznapxmyrkyf1w78qzxdv88s5nn8s1m8qdkgwkz")))) + (properties `((upstream-name . "atSNP"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocfilecache + r-biocparallel + r-bsgenome + r-data-table + r-ggplot2 + r-lifecycle + r-motifstack + r-rappdirs + r-rcpp + r-testthat)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/sunyoungshin/atSNP") + (synopsis + "Affinity test for identifying regulatory single nucleotide polymorphisms") + (description + "The atSNP package performs affinity tests of motif matches with the +@dfn{SNP} (single nucleotide polymorphism) or the reference genomes and +SNP-led changes in motif matches.") + (license license:gpl2))) + (define-public r-attract (package (name "r-attract") |