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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-10-14 19:27:28 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-10-15 21:07:24 +0200 |
| commit | 5d58d2068423e2358044737fc27e5c4b875a5d20 (patch) | |
| tree | dda478c7cb1e8f130a66b9790c2bf173a8670ffa | |
| parent | 1682aba2473642f9b282916e4b8f3a1cdb3f35fc (diff) | |
| download | guix-5d58d2068423e2358044737fc27e5c4b875a5d20.tar.gz guix-5d58d2068423e2358044737fc27e5c4b875a5d20.zip | |
gnu: Add r-macrophage.
X-Debbugs-Cc: rekado@elephly.net
* gnu/packages/bioconductor.scm (r-macrophage): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ecb60f2e24..3692bb94af 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1384,6 +1384,29 @@ genomation package. Included are Chip Seq, Methylation and Cage data, downloaded from Encode.") (license license:gpl3+))) +(define-public r-macrophage + (package + (name "r-macrophage") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "macrophage" version + 'experiment)) + (sha256 + (base32 + "0ml8v92w021fmzsn4yl90ap3l4l3b9c1pk8pzsrm122p82wzlyms")))) + (properties `((upstream-name . "macrophage"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/macrophage") + (synopsis "Human macrophage immune response data") + (description + "This package provides the output of running @code{Salmon} on a set of 24 +RNA-seq samples from Alasoo, et al. \"Shared genetic effects on chromatin and +gene expression indicate a role for enhancer priming in immune response\", published +in Nature Genetics, January 2018.") + (license license:gpl2+))) + (define-public r-msdata (package (name "r-msdata") |