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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-03-25 00:18:47 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-10-04 11:03:23 +0200 |
| commit | 58a3333f58fdcc32be83b26348f856c31c8a5573 (patch) | |
| tree | 6cf3b0d306ba0b614f3e9ba20471f9c1e8ef8351 | |
| parent | d0aaa5aacf42dda85de68a564b05c5e16d509379 (diff) | |
| download | guix-58a3333f58fdcc32be83b26348f856c31c8a5573.tar.gz guix-58a3333f58fdcc32be83b26348f856c31c8a5573.zip | |
gnu: Add r-anota2seq.
* gnu/packages/bioconductor.scm (r-anota2seq): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 8e13044b1a..e5eb859ad0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14197,6 +14197,42 @@ analyzed in parallel the library performs a number of tests to assure that the data set is suitable for such analysis.") (license license:gpl3))) +(define-public r-anota2seq + (package + (name "r-anota2seq") + (version "1.22.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "anota2seq" version)) + (sha256 + (base32 "0pmk45276bl3qppzxlp4jpc8bsvdpca8nzrdl6c4n9r3xhzfpyq0")))) + (properties `((upstream-name . "anota2seq"))) + (build-system r-build-system) + (propagated-inputs + (list r-deseq2 + r-edger + r-limma + r-multtest + r-qvalue + r-rcolorbrewer + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/anota2seq") + (synopsis "Transcriptome-wide analysis of translational efficiency") + (description + "The anota2seq package provides analysis of translational efficiency and +differential expression analysis for polysome-profiling and ribosome-profiling +studies (two or more sample classes) quantified by RNA sequencing or +DNA-microarray. Polysome-profiling and ribosome-profiling typically generate +data for two RNA sources, translated mRNA and total mRNA. Analysis of +differential expression is used to estimate changes within each RNA source. +Analysis of translational efficiency aims to identify changes in translation +efficiency leading to altered protein levels that are independent of total +mRNA levels or buffering, a mechanism regulating translational efficiency so +that protein levels remain constant despite fluctuating total mRNA levels.") + (license license:gpl3))) + (define-public r-sigpathway (package (name "r-sigpathway") |