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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 17:07:08 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 17:42:18 +0200 |
| commit | 5622628fd1a6e849b9ccebc37a944d892acb4c51 (patch) | |
| tree | 61dfbb0aabc299ccbd3ab25f4c9767ea97b8b235 | |
| parent | 2bdc88fce75495496f1d7af65f1cadd1e5f51a66 (diff) | |
| download | guix-5622628fd1a6e849b9ccebc37a944d892acb4c51.tar.gz guix-5622628fd1a6e849b9ccebc37a944d892acb4c51.zip | |
gnu: Add r-progeny.
* gnu/packages/bioconductor.scm (r-progeny): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 823282397c..d033258d17 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4202,3 +4202,25 @@ This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID sequencing reads aligner and @code{AdapterRemoval}, a convenient tool for rapid adapter trimming, identification, and read merging.") (license license:gpl3+))) + +(define-public r-progeny + (package + (name "r-progeny") + (version "1.4.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "progeny" version)) + (sha256 + (base32 + "02z09rbzi305jrwzai8zayxi82563lxcaldp4r9pw564qkbl7pk7")))) + (build-system r-build-system) + (propagated-inputs `(("r-biobase" ,r-biobase))) + (home-page "https://github.com/saezlab/progeny") + (synopsis "Pathway responsive gene activity inference") + (description + "This package provides a function to infer pathway activity from gene +expression. It contains the linear model inferred in the publication +\"Perturbation-response genes reveal signaling footprints in cancer gene +expression\".") + (license license:asl2.0))) |