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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-02-19 14:07:29 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-02-19 14:07:29 +0100 |
| commit | 549a72f1289b3ad27410f248b92b1a10b838d123 (patch) | |
| tree | 247156ad22c38b35d311836b64316e19315920a4 | |
| parent | 06ad84c4260cb03f3255e0f22bf9e33d5fffe641 (diff) | |
| download | guix-549a72f1289b3ad27410f248b92b1a10b838d123.tar.gz guix-549a72f1289b3ad27410f248b92b1a10b838d123.zip | |
gnu: r-sgloptim: Apply patch to fix build.
* gnu/packages/patches/r-sgloptim.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cran.scm (r-sgloptim)[source]: Apply it.
Change-Id: I6435ec1dfadcffac684c378cd074777a19cd0d7f
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/cran.scm | 3 | ||||
| -rw-r--r-- | gnu/packages/patches/r-sgloptim.patch | 53 |
3 files changed, 56 insertions, 1 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index c08b27f94d..58011d1149 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -1973,6 +1973,7 @@ dist_patch_DATA = \ %D%/packages/patches/reposurgeon-add-missing-docbook-files.patch \ %D%/packages/patches/r-httpuv-1.6.6-unvendor-libuv.patch \ %D%/packages/patches/r-sapa-lapack.patch \ + %D%/packages/patches/r-sgloptim.patch \ %D%/packages/patches/ri-li-modernize_cpp.patch \ %D%/packages/patches/ripperx-missing-file.patch \ %D%/packages/patches/rpcbind-CVE-2017-8779.patch \ diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2822da369a..a076a52640 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -33337,7 +33337,8 @@ filter.") (uri (cran-uri "sglOptim" version)) (sha256 (base32 - "15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr")))) + "15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr")) + (patches (search-patches "r-sgloptim.patch")))) (properties `((upstream-name . "sglOptim"))) (build-system r-build-system) diff --git a/gnu/packages/patches/r-sgloptim.patch b/gnu/packages/patches/r-sgloptim.patch new file mode 100644 index 0000000000..efba2c7013 --- /dev/null +++ b/gnu/packages/patches/r-sgloptim.patch @@ -0,0 +1,53 @@ +From cb9a15eb9d558b2b4b67f9e6806b394f65bff01f Mon Sep 17 00:00:00 2001 +From: Dirk Eddelbuettel <edd@debian.org> +Date: Wed, 30 Nov 2022 20:15:42 -0600 +Subject: [PATCH] Simplify includes and only include RcppArmadillo.h + +--- + inst/include/sgl.h | 14 +++++--------- + 1 file changed, 5 insertions(+), 9 deletions(-) + +diff --git a/inst/include/sgl.h b/inst/include/sgl.h +index a36011e..869a295 100644 +--- a/inst/include/sgl.h ++++ b/inst/include/sgl.h +@@ -21,13 +21,12 @@ + + #define R_NO_REMAP + ++//R, Rcpp, RcppArmadillo ++#include <RcppArmadillo.h> ++ + //Progress monitor + #include <progress.hpp> + +-//Rcpp ect +-#include <RcppCommon.h> +-#include <Rconfig.h> +-#include <RcppArmadilloConfig.h> + + // Debugging + #ifdef SGL_DEBUG +@@ -45,8 +44,10 @@ + #else + // Do no debugging + #define ARMA_NO_DEBUG ++#ifndef NDEBUG + #define NDEBUG + #endif ++#endif + + // Registration helper macros + #define STR_VALUE(x) #x +@@ -59,11 +60,6 @@ + + #define CALL_METHOD(METHOD, MODULE, ARGS) {GET_STR_VALUE(FUN_NAME(METHOD,MODULE)), (DL_FUNC) &r_ ## MODULE ## _ ## METHOD, ARGS} + +-//Support for xl matrices +-//#define ARMA_64BIT_WORD +- +-#include <armadillo> +-#include <Rcpp.h> + + //Boost + #include <boost/math/special_functions/fpclassify.hpp> |