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authorRicardo Wurmus <rekado@elephly.net>2021-06-05 01:48:07 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-06-05 09:12:39 +0200
commit53ec97713a74da0acb9def81d25ff3e6dd6112f6 (patch)
treedc6480b4fa910c0abd343e11abefa2cbd981df15
parent8caab758834cc6e6c3c664e7c7cb138662413fb0 (diff)
downloadguix-53ec97713a74da0acb9def81d25ff3e6dd6112f6.tar.gz
guix-53ec97713a74da0acb9def81d25ff3e6dd6112f6.zip
gnu: Add r-metapod.
* gnu/packages/bioconductor.scm (r-metapod): New variable.
-rw-r--r--gnu/packages/bioconductor.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d779a11643..fe365b4d86 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5743,6 +5743,35 @@ phylogenetic trees and other tree-like structures with their annotation
data.")
(license license:artistic2.0)))
+(define-public r-metapod
+ (package
+ (name "r-metapod")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "metapod" version))
+ (sha256
+ (base32
+ "1hbcwr6d8gyrf4azh0gi588xkrg6gz7gsb5hbvzqkhplbsp6shlv"))))
+ (properties `((upstream-name . "metapod")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-rcpp" ,r-rcpp)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/metapod")
+ (synopsis "Meta-analyses on p-values of differential analyses")
+ (description
+ "This package implements a variety of methods for combining p-values in
+differential analyses of genome-scale datasets. Functions can combine
+p-values across different tests in the same analysis (e.g., genomic windows in
+ChIP-seq, exons in RNA-seq) or for corresponding tests across separate
+analyses (e.g., replicated comparisons, effect of different treatment
+conditions). Support is provided for handling log-transformed input p-values,
+missing values and weighting where appropriate.")
+ (license license:gpl3)))
+
(define-public r-biocsingular
(package
(name "r-biocsingular")