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| author | Spencer King <spencer.king@geneoscopy.com> | 2024-05-23 17:03:34 +0000 |
|---|---|---|
| committer | Zheng Junjie <zhengjunjie@iscas.ac.cn> | 2024-07-30 15:44:36 +0800 |
| commit | 471c4322df712efc3e4b48afe270d9470aa6e1c1 (patch) | |
| tree | 260713b79266e3badcbb82530e148ed0a97b9d54 | |
| parent | 6efd02551d19b6d792f1a257251c3f104b07c857 (diff) | |
| download | guix-471c4322df712efc3e4b48afe270d9470aa6e1c1.tar.gz guix-471c4322df712efc3e4b48afe270d9470aa6e1c1.zip | |
gnu: bwa: Update to 0.7.18.
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.18.
[source]: Switch to git-fetch.
[supported-systems]: Add aarch64-linux.
Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 22 |
1 files changed, 11 insertions, 11 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 063017a8aa..a07b6d376e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -26,6 +26,7 @@ ;;; Copyright © 2022, 2023, 2024 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; Copyright © 2022 Antero Mejr <antero@mailbox.org> ;;; Copyright © 2024 Alexis Simon <alexis.simon@runbox.com> +;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -4258,15 +4259,16 @@ splice junctions between exons.") (define-public bwa (package (name "bwa") - (version "0.7.17") + (version "0.7.18") (source (origin - (method url-fetch) - (uri (string-append - "https://github.com/lh3/bwa/releases/download/v" - version "/bwa-" version ".tar.bz2")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/lh3/bwa") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "1zfhv2zg9v1icdlq4p9ssc8k01mca5d1bd87w71py2swfi74s6yy")))) + "1vf3iwkzxqkzhcfz2q3qyvcv3jrvbb012qy21pfgjl8lv20ywfr1")))) (build-system gnu-build-system) (arguments '(#:tests? #f ;no "check" target @@ -4284,12 +4286,10 @@ splice junctions between exons.") (install-file "libbwa.a" lib) (install-file "README.md" doc) (install-file "bwa.1" man)))) - ;; no "configure" script - (delete 'configure)))) + ;; no "configure" script + (delete 'configure)))) (inputs (list zlib)) - ;; Non-portable SSE instructions are used so building fails on platforms - ;; other than x86_64. - (supported-systems '("x86_64-linux")) + (supported-systems '("x86_64-linux" "aarch64-linux")) (home-page "https://bio-bwa.sourceforge.net/") (synopsis "Burrows-Wheeler sequence aligner") (description |