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authorRicardo Wurmus <rekado@elephly.net>2021-03-15 12:15:18 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-03-15 12:15:18 +0100
commit3eeb7dbf04b5ee3120b3ebcf264d54a56ad934e2 (patch)
tree9bfac3b6f4cf51a8d1f4834aee653d0514bd4d9e
parent1daedaa8646696783c88553e03035d547fd001ca (diff)
downloadguix-3eeb7dbf04b5ee3120b3ebcf264d54a56ad934e2.tar.gz
guix-3eeb7dbf04b5ee3120b3ebcf264d54a56ad934e2.zip
gnu: r-gkmsvm: Move back to (gnu packages cran).
* gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here... * gnu/packages/cran.scm (r-gkmsvm): ...to here.
-rw-r--r--gnu/packages/bioconductor.scm27
-rw-r--r--gnu/packages/cran.scm26
2 files changed, 26 insertions, 27 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 526c2eecbb..4f8e0562b1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4042,33 +4042,6 @@ visualising metrics relative to experiment run time or spatially over the
surface of a flowcell.")
(license license:expat)))
-;; This is a CRAN package, but it depends on packages from Bioconductor.
-(define-public r-gkmsvm
- (package
- (name "r-gkmsvm")
- (version "0.81.0")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "gkmSVM" version))
- (sha256
- (base32
- "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj"))))
- (properties `((upstream-name . "gkmSVM")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-kernlab" ,r-kernlab)
- ("r-rcpp" ,r-rcpp)
- ("r-rocr" ,r-rocr)
- ("r-seqinr" ,r-seqinr)))
- (home-page "https://cran.r-project.org/web/packages/gkmSVM")
- (synopsis "Gapped-kmer support vector machine")
- (description
- "This R package provides tools for training gapped-kmer SVM classifiers
-for DNA and protein sequences. This package supports several sequence
-kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
- (license license:gpl2+)))
-
;; This is a CRAN package, but it depends on multtest from Bioconductor.
(define-public r-mutoss
(package
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5854ff6031..30c346d0c1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16471,6 +16471,32 @@ visualizations and provides the same flexible approach to building up plots
layer by layer.")
(license license:gpl3)))
+(define-public r-gkmsvm
+ (package
+ (name "r-gkmsvm")
+ (version "0.81.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "gkmSVM" version))
+ (sha256
+ (base32
+ "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj"))))
+ (properties `((upstream-name . "gkmSVM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-kernlab" ,r-kernlab)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rocr" ,r-rocr)
+ ("r-seqinr" ,r-seqinr)))
+ (home-page "https://cran.r-project.org/web/packages/gkmSVM")
+ (synopsis "Gapped-kmer support vector machine")
+ (description
+ "This R package provides tools for training gapped-kmer SVM classifiers
+for DNA and protein sequences. This package supports several sequence
+kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
+ (license license:gpl2+)))
+
(define-public r-varselrf
(package
(name "r-varselrf")