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authorRicardo Wurmus <rekado@elephly.net>2024-11-22 11:58:38 +0100
committerRicardo Wurmus <rekado@elephly.net>2024-12-03 16:59:00 +0100
commit387ff8c994e90586dbdc8ec3ac5ac09b6a2a76d2 (patch)
tree1bb4740d2cd4ab9cc054740ef3b9372b2533138e
parent1447cfa0311606cdf7d14a17c1bd8d3a6b317ff2 (diff)
downloadguix-387ff8c994e90586dbdc8ec3ac5ac09b6a2a76d2.tar.gz
guix-387ff8c994e90586dbdc8ec3ac5ac09b6a2a76d2.zip
gnu: r-varianttools: Add test inputs.
* gnu/packages/bioconductor.scm (r-varianttools)[native-inputs]: Add r-runit. Change-Id: I93b111c04202a8d1ebc00439bcc07244d7ba0e54
-rw-r--r--gnu/packages/bioconductor.scm1
1 files changed, 1 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 91b28c8e27..ea287a891b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -16505,6 +16505,7 @@ peak definition in combination with known profile characteristics.")
r-rtracklayer
r-s4vectors
r-variantannotation))
+ (native-inputs (list r-runit))
(home-page "https://bioconductor.org/packages/VariantTools/")
(synopsis "Tools for exploratory analysis of variant calls")
(description
ewise. * gnu/tests/version-control.scm (run-cgit-test): Likewise. (run-git-http-test, run-gitolite-test, run-gitile-test): Likewise. * gnu/tests/virtualization.scm (run-libvirt-test, run-childhurd-test): Likewise. * gnu/tests/web.scm (run-webserver-test, run-php-fpm-test) (run-hpcguix-web-server-test, run-tailon-test, run-patchwork-test): Likewise. Ludovic Courtès 2020-11-05services: Remove imports of (ice-9 …) modules....* gnu/services/monitoring.scm (zabbix-server-activation): Remove (ice-9 rdelim) from the imported modules. (zabbix-agent-activation): Likewise. * gnu/tests/mail.scm (run-exim-test)[test]: Remove (ice-9 ftw) from the imported modules. Ludovic Courtès 2020-03-16tests: opensmtpd: Check /var/spool/mail instead of /var/mail....The test had been failing since the upgrade to 6.6.3p1 in commit 2dbfd8eec43b602d23cee3fdd2842cc333e36c24. * gnu/services/mail.scm (opensmtpd-activation): Create /var/spool/mail. * gnu/tests/mail.scm (run-opensmtpd-test): Check /var/spool/mail instead of /var/mail. Ludovic Courtès 2020-03-16tests: opensmtpd: Gracefully handle test failure....Previously the 'wait' loop would run for ~1024 seconds, at which point we'd reach the file descriptor limit due to the leak in 'queue-empty?'. * gnu/tests/mail.scm (run-opensmtpd-test)[test]("mail arrived"): In 'queue-empty?', close PIPE to avoid file descriptor leak. In 'wait' loop, arrange to run at most 20 times. Ludovic Courtès 2020-03-09tests: getmail: Provide a pre-initialized user account password....* gnu/tests/mail.scm (%getmail-os): Rewrite so that the "alice" account has a password. (run-getmail-test)[test]("set password for alice"): Remove. This would not work since commit 8b9cad01e9619f53dc5a65892ca6a09ca5de3447 since 'passwd' would no longer be in $PATH. Ludovic Courtès