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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-04-27 13:44:36 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-04-27 16:29:20 +0200 |
| commit | 37f584592ad7ac1ce9644b14bf96a2620be0b237 (patch) | |
| tree | 40497108d517c61d1ca8a09c5425471f20f4f060 | |
| parent | 73fe0dab503c3a2d2a2dac291e3d3809872acbf4 (diff) | |
| download | guix-37f584592ad7ac1ce9644b14bf96a2620be0b237.tar.gz guix-37f584592ad7ac1ce9644b14bf96a2620be0b237.zip | |
gnu: Add r-aggregatebiovar.
* gnu/packages/bioconductor.scm (r-aggregatebiovar): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3d68db6d68..b760db2db7 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1821,6 +1821,40 @@ and meta analysis at both gene and gene-set levels of the data from each experiment.") (license license:gpl2+))) +(define-public r-aggregatebiovar + (package + (name "r-aggregatebiovar") + (version "1.4.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "aggregateBioVar" version)) + (sha256 + (base32 + "1wbfp1pf62di6pzxsf36lmzk6y9dllz1n4iv3mhpb1x8cvy4hqqk")))) + (properties `((upstream-name . "aggregateBioVar"))) + (build-system r-build-system) + (propagated-inputs + (list r-matrix + r-rlang + r-s4vectors + r-singlecellexperiment + r-summarizedexperiment + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/jasonratcliff/aggregateBioVar") + (synopsis "Differential gene expression analysis for multi-subject scRNA-seq") + (description + "This package @code{aggregateBioVar} contains tools to summarize single +cell gene expression profiles at the level of subject for single cell RNA-seq +data collected from more than one subject (e.g. biological sample or technical +replicates). A @code{SingleCellExperiment} object is taken as input and +converted to a list of @code{SummarizedExperiment} objects, where each list +element corresponds to an assigned cell type. The @code{SummarizedExperiment} +objects contain aggregate gene-by-subject count matrices and inter-subject +column metadata for individual subjects that can be processed using downstream +bulk RNA-seq tools.") + (license license:gpl3))) + (define-public r-aneufinder (package (name "r-aneufinder") |