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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-05-02 11:49:55 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-11-24 15:35:38 +0100 |
| commit | 2e85d26ebb5be6f7c52a9f2d780e0ae34fd40692 (patch) | |
| tree | 093ccf9ebe1db1b47fb41bb999aa9c5013317f96 | |
| parent | 6f39e161241931f101f3c7924bfa4ece34959604 (diff) | |
| download | guix-2e85d26ebb5be6f7c52a9f2d780e0ae34fd40692.tar.gz guix-2e85d26ebb5be6f7c52a9f2d780e0ae34fd40692.zip | |
gnu: Add r-aims.
* gnu/packages/bioconductor.scm (r-aims): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index cd9fa0d2fe..179551c2f0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2107,6 +2107,30 @@ using the linear model features implemented in limma. Standard Bioconductor objects are used so that other packages could be used as well.") (license license:gpl3))) +(define-public r-aims + (package + (name "r-aims") + (version "1.28.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AIMS" version)) + (sha256 + (base32 + "1z7yzaizyzcv556w8880603nd947k0d6raadjm42mdl66mma0cdx")))) + (properties `((upstream-name . "AIMS"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-e1071)) + (home-page "https://git.bioconductor.org/packages/AIMS") + (synopsis + "Absolute assignment of breast cancer intrinsic molecular subtype") + (description + "This package contains an implementation of @code{AIMS} -- Absolute +Intrinsic Molecular Subtyping. It contains necessary functions to assign the +five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, +Basal-like, Normal-like). Assignments could be done on individual samples as +well as on dataset of gene expression data.") + (license license:artistic2.0))) + (define-public r-airpart (package (name "r-airpart") |