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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-04-28 18:55:29 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-04-29 20:28:01 +0200 |
| commit | 1d91760996d3740b654c1d5804318f79ed889e7d (patch) | |
| tree | b4b63988e974756dc8a539f09741032fb7acceda | |
| parent | dfd9bb7b1ae6bfbc899f85040325e76478f8088e (diff) | |
| download | guix-1d91760996d3740b654c1d5804318f79ed889e7d.tar.gz guix-1d91760996d3740b654c1d5804318f79ed889e7d.zip | |
gnu: r-motifstack: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.0.
[source]: Delete minified JavaScript file.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild and sources for d3.v4.js.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 37 |
1 files changed, 34 insertions, 3 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fdd549f2c8..d5a0832d4f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13377,16 +13377,40 @@ Bioconductor.") (define-public r-motifstack (package (name "r-motifstack") - (version "1.42.0") + (version "1.44.0") (source (origin (method url-fetch) (uri (bioconductor-uri "motifStack" version)) (sha256 (base32 - "18gfx5dq83s2ny39a7cgg4r3b05gg9l0kfg83brwrm1cby08jdhm")))) + "1ymcsfcgzmqmdwjfgkwmnz23lb2gclj6g9297ap99p9ndg2i7hjb")) + (snippet + '(delete-file "inst/htmlwidgets/lib/d3/d3.v4.min.js")))) (properties `((upstream-name . "motifStack"))) (build-system r-build-system) + (arguments + (list + #:modules '((guix build utils) + (guix build r-build-system) + (srfi srfi-1)) + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'process-javascript + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion "inst/htmlwidgets/lib/d3" + (call-with-values + (lambda () + (unzip2 + `((,(assoc-ref inputs "_") + "d3.v4.min.js")))) + (lambda (sources targets) + (for-each (lambda (source target) + (format #true "Processing ~a --> ~a~%" + source target) + (invoke "esbuild" source "--minify" + (string-append "--outfile=" target))) + sources targets))))))))) (propagated-inputs (list r-ade4 r-biostrings @@ -13395,7 +13419,14 @@ Bioconductor.") r-tfbstools r-xml)) (native-inputs - (list r-knitr)) + (list esbuild r-knitr + (origin + (method url-fetch) + (uri "https://web.archive.org/web/20230428092426id_/\ +https://d3js.org/d3.v4.js") + (sha256 + (base32 + "0y7byf6kcinfz9ac59jxc4v6kppdazmnyqfav0dm4h550fzfqqlg"))))) (home-page "https://bioconductor.org/packages/motifStack/") (synopsis "Plot stacked logos for DNA, RNA and amino acid sequences") (description |