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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2023-03-25 00:18:49 +0100
committerRicardo Wurmus <rekado@elephly.net>2023-10-04 11:03:23 +0200
commit1025316d806ca97f4524b4399adc558970994f9d (patch)
tree3d1c6916919d36187cb210421ea094b2c408f983
parentf989150083a25b64cd848679f0ca7dca00b2a051 (diff)
downloadguix-1025316d806ca97f4524b4399adc558970994f9d.tar.gz
guix-1025316d806ca97f4524b4399adc558970994f9d.zip
gnu: Add r-hybridmtest.
* gnu/packages/bioconductor.scm (r-hybridmtest): New variable.
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e5eb859ad0..f16ab9bd81 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -18535,6 +18535,37 @@ the read count and GC content bias.")
validating output, provides an S4 SBML DOM, converts SBML to R graph objects.")
(license license:artistic2.0)))
+(define-public r-hybridmtest
+ (package
+ (name "r-hybridmtest")
+ (version "1.44.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "HybridMTest" version))
+ (sha256
+ (base32 "19pycad35hc7ylnsz75bv029y1r6j9xvrbhzk4i64i7jn8gi7ngh"))))
+ (properties `((upstream-name . "HybridMTest")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-fdrtool
+ r-mass
+ r-survival))
+ (home-page "https://bioconductor.org/packages/HybridMTest")
+ (synopsis "Hybrid multiple testing")
+ (description
+ "This package performs hybrid multiple testing that incorporates method
+selection and assumption evaluations into the analysis using @acronym{EBP,
+empirical Bayes probability} estimates obtained by Grenander density
+estimation. For instance, for 3-group comparison analysis, Hybrid Multiple
+testing considers EBPs as weighted EBPs between F-test and H-test with EBPs
+from Shapiro Wilk test of normality as weigth. Instead of just using EBPs
+from F-test only or using H-test only, this methodology combines both types of
+EBPs through EBPs from Shapiro Wilk test of normality. This methodology uses
+then the law of total EBPs.")
+ (license license:gpl2+)))
+
(define-public r-hypergraph
(package
(name "r-hypergraph")