aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2023-05-04 17:46:40 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-05-08 10:34:06 +0200
commit0e09e8ab1554a7dffd60101cb4e631b348e43c9c (patch)
tree7f66f5f348010803603907df039c5c6c5789f68b
parentb7e77446261fdc8dab360d7835a5dec919f6a79f (diff)
downloadguix-0e09e8ab1554a7dffd60101cb4e631b348e43c9c.tar.gz
guix-0e09e8ab1554a7dffd60101cb4e631b348e43c9c.zip
gnu: Add r-multibac.
* gnu/packages/bioconductor.scm (r-multibac): New variable.
-rw-r--r--gnu/packages/bioconductor.scm30
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 768b55b25e..72bf40cc41 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10101,6 +10101,36 @@ processing to visualization and annotation.")
large datasets, including support for on-disk data representation.")
(license license:expat)))
+(define-public r-multibac
+ (package
+ (name "r-multibac")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MultiBaC" version))
+ (sha256
+ (base32 "1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i"))))
+ (properties `((upstream-name . "MultiBaC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ggplot2
+ r-matrix
+ r-multiassayexperiment
+ r-pcamethods
+ r-plotrix
+ r-ropls))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/MultiBaC")
+ (synopsis "Multiomic batch effect correction")
+ (description
+ "MultiBaC is a strategy to correct batch effects from multiomic datasets
+distributed across different labs or data acquisition events. MultiBaC is
+able to remove batch effects across different omics generated within separate
+batches provided that at least one common omic data type is included in all
+the batches considered.")
+ (license license:gpl3)))
+
(define-public r-multtest
(package
(name "r-multtest")