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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-09-07 14:39:32 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-09-07 14:47:57 +0200 |
| commit | 0d1990b98610b75e982f84ffb370daffe88fb66f (patch) | |
| tree | 3bf6bfeb1561ca4e5f73cc4f9a8bcbabdfccf279 | |
| parent | b63fb6a2e64c46653c9888d072d5f46c09f52fdd (diff) | |
| download | guix-0d1990b98610b75e982f84ffb370daffe88fb66f.tar.gz guix-0d1990b98610b75e982f84ffb370daffe88fb66f.zip | |
gnu: Add r-bsseq.
* gnu/packages/bioconductor.scm (r-bsseq): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7391afa6d3..815efa1ae0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14510,6 +14510,52 @@ estimated efficient influence function. The procedure accommodates the use of ensemble machine learning for the estimation of nuisance functions.") (license license:expat))) +(define-public r-bsseq + (package + (name "r-bsseq") + (version "1.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "bsseq" version)) + (sha256 + (base32 + "1xpv85hr681kkkilsnasndkszwmzbzq11y0lff4na2ilsm7sqmmi")))) + (properties `((upstream-name . "bsseq"))) + (build-system r-build-system) + (propagated-inputs + `(("r-beachmat" ,r-beachmat) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-data-table" ,r-data-table) + ("r-delayedarray" ,r-delayedarray) + ("r-delayedmatrixstats" ,r-delayedmatrixstats) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-gtools" ,r-gtools) + ("r-hdf5array" ,r-hdf5array) + ("r-iranges" ,r-iranges) + ("r-limma" ,r-limma) + ("r-locfit" ,r-locfit) + ("r-permute" ,r-permute) + ("r-r-utils" ,r-r-utils) + ("r-rcpp" ,r-rcpp) + ("r-rhdf5" ,r-rhdf5) + ("r-s4vectors" ,r-s4vectors) + ("r-scales" ,r-scales) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/hansenlab/bsseq") + (synopsis "Analyze, manage and store bisulfite sequencing data") + (description + "This package provides a collection of tools for analyzing and +visualizing bisulfite sequencing data.") + (license license:artistic2.0))) + (define-public r-tximeta (package (name "r-tximeta") |