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| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2024-11-05 16:49:39 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-11-06 11:41:05 +0100 |
| commit | 0c1a6db8094dc6b20762eceae369daae545fc5e4 (patch) | |
| tree | ccbcb20d5312d28e43649498c9a95d6ecf7c966c | |
| parent | f5ca62fcadf7a1a61cb13dc89edcfd3e9884e9e0 (diff) | |
| download | guix-0c1a6db8094dc6b20762eceae369daae545fc5e4.tar.gz guix-0c1a6db8094dc6b20762eceae369daae545fc5e4.zip | |
gnu: Add r-seuratextend.
* gnu/packages/bioinformatics.scm (r-seuratextend): New variable.
Change-Id: I9ce0d90a2f05d4e074459046c380849cf9f63978
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f7f2f4a52f..cf6d9f5c14 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -20317,6 +20317,52 @@ of statistics & QC, interaction with the Seurat object. Some functionalities require functions from CodeAndRoll and MarkdownReports libraries.") (license license:gpl3)))) +(define-public r-seuratextend + (let ((commit "5382e921f7b365c7b75b20d07cb455e4390fe36f") + (revision "1")) + (package + (name "r-seuratextend") + (version (git-version "1.0.7" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/huayc09/SeuratExtend") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1rlx20jyfdrymxn8b9dsf9n9jk9rwjjx1wy2f00layvd57g9ch2q")))) + (properties `((upstream-name . "SeuratExtend"))) + (build-system r-build-system) + (propagated-inputs (list r-biocmanager + r-dplyr + r-ggplot2 + r-ggpubr + r-glue + r-hdf5r + r-magrittr + r-mosaic + r-purrr + r-remotes + r-reshape2 + r-reticulate + r-rlist + r-scales + r-seurat + r-seuratextenddata + r-seuratobject + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/huayc09/SeuratExtend") + (synopsis "Enhanced toolkit for scRNA-seq analysis") + (description + "This package is designed to improve and simplify the analysis of +scRNA-seq data. It uses the Seurat object for this purpose. It provides an +array of enhanced visualization tools, an integrated functional and pathway +analysis pipeline, seamless integration with popular Python tools, and a suite +of utility functions to aid in data manipulation and presentation.") + (license license:gpl3+)))) + (define-public r-seuratextenddata (let ((commit "e7f17d4bacca436705b06b2cd0c879f83add9271") (revision "1")) |