#pragma once

#include "config.h"

#include <string>
#include <list>
#include <set>

#include <boost/format.hpp>

/* Before 4.7, gcc's std::exception uses empty throw() specifiers for
 * its (virtual) destructor and what() in c++11 mode, in violation of spec
 */
#ifdef __GNUC__
#if __GNUC__ < 4 || (__GNUC__ == 4 && __GNUC_MINOR__ < 7)
#define EXCEPTION_NEEDS_THROW_SPEC
#endif
#endif


namespace nix {


/* Inherit some names from other namespaces for convenience. */
using std::string;
using std::list;
using std::set;
using std::vector;
using boost::format;


struct FormatOrString
{
    string s;
    FormatOrString(const string & s) : s(s) { };
    FormatOrString(const format & f) : s(f.str()) { };
    FormatOrString(const char * s) : s(s) { };
};


/* BaseError should generally not be caught, as it has Interrupted as
   a subclass. Catch Error instead. */
class BaseError : public std::exception
{
protected:
    string prefix_; // used for location traces etc.
    string err;
public:
    unsigned int status; // exit status
    BaseError(const FormatOrString & fs, unsigned int status = 1);
#ifdef EXCEPTION_NEEDS_THROW_SPEC
    ~BaseError() throw () { };
    const char * what() const throw () { return err.c_str(); }
#else
    const char * what() const noexcept { return err.c_str(); }
#endif
    const string & msg() const { return err; }
    const string & prefix() const { return prefix_; }
    BaseError & addPrefix(const FormatOrString & fs);
};

#define MakeError(newClass, superClass) \
    class newClass : public superClass                  \
    {                                                   \
    public:                                             \
        newClass(const FormatOrString & fs, unsigned int status = 1) : superClass(fs, status) { }; \
    };

MakeError(Error, BaseError)

class SysError : public Error
{
public:
    int errNo;
    SysError(const FormatOrString & fs);
};


typedef list<string> Strings;
typedef set<string> StringSet;


/* Paths are just strings. */
typedef string Path;
typedef list<Path> Paths;
typedef set<Path> PathSet;


typedef enum {
    lvlError = 0,
    lvlInfo,
    lvlTalkative,
    lvlChatty,
    lvlDebug,
    lvlVomit
} Verbosity;


}
95e50a3ac949f79c1ecf6253'>root</a>/<a href='/guix/commit/gnu?id=214e784b577ae91995e50a3ac949f79c1ecf6253'>gnu</a>/<a href='/guix/commit/gnu/packages?id=214e784b577ae91995e50a3ac949f79c1ecf6253'>packages</a>/<a href='/guix/commit/gnu/packages/bioconductor.scm?id=214e784b577ae91995e50a3ac949f79c1ecf6253'>bioconductor.scm</a></div><div class='content'><div class='cgit-panel'><b>diff options</b><form method='get'><input type='hidden' name='id' value='214e784b577ae91995e50a3ac949f79c1ecf6253'/><table><tr><td colspan='2'/></tr><tr><td class='label'>context:</td><td class='ctrl'><select name='context' onchange='this.form.submit();'><option value='1'>1</option><option value='2'>2</option><option value='3' selected='selected'>3</option><option value='4'>4</option><option value='5'>5</option><option value='6'>6</option><option value='7'>7</option><option value='8'>8</option><option value='9'>9</option><option value='10'>10</option><option value='15'>15</option><option value='20'>20</option><option value='25'>25</option><option value='30'>30</option><option value='35'>35</option><option value='40'>40</option></select></td></tr><tr><td class='label'>space:</td><td class='ctrl'><select name='ignorews' onchange='this.form.submit();'><option value='0' selected='selected'>include</option><option value='1'>ignore</option></select></td></tr><tr><td class='label'>mode:</td><td class='ctrl'><select name='dt' onchange='this.form.submit();'><option value='0' selected='selected'>unified</option><option value='1'>ssdiff</option><option value='2'>stat only</option></select></td></tr><tr><td/><td class='ctrl'><noscript><input type='submit' value='reload'/></noscript></td></tr></table></form></div><table summary='commit info' class='commit-info'>
<tr><th>author</th><td>Ricardo Wurmus &lt;rekado@elephly.net&gt;</td><td class='right'>2021-06-05 08:49:45 +0200</td></tr>
<tr><th>committer</th><td>Ricardo Wurmus &lt;rekado@elephly.net&gt;</td><td class='right'>2021-06-05 09:12:43 +0200</td></tr>
<tr><th>commit</th><td colspan='2' class='oid'><a href='/guix/commit/gnu/packages/bioconductor.scm?id=214e784b577ae91995e50a3ac949f79c1ecf6253'>214e784b577ae91995e50a3ac949f79c1ecf6253</a> (<a href='/guix/patch/gnu/packages/bioconductor.scm?id=214e784b577ae91995e50a3ac949f79c1ecf6253'>patch</a>)</td></tr>
<tr><th>tree</th><td colspan='2' class='oid'><a href='/guix/tree/?id=214e784b577ae91995e50a3ac949f79c1ecf6253'>1aaf9896352b89a78983e43be39f01fc6b7a4880</a> /<a href='/guix/tree/gnu/packages/bioconductor.scm?id=214e784b577ae91995e50a3ac949f79c1ecf6253'>gnu/packages/bioconductor.scm</a></td></tr>
<tr><th>parent</th><td colspan='2' class='oid'><a href='/guix/commit/gnu/packages/bioconductor.scm?id=1b44202e207f10e4288fefc31705a5ef1d2e685a'>1b44202e207f10e4288fefc31705a5ef1d2e685a</a> (<a href='/guix/diff/gnu/packages/bioconductor.scm?id=214e784b577ae91995e50a3ac949f79c1ecf6253&amp;id2=1b44202e207f10e4288fefc31705a5ef1d2e685a'>diff</a>)</td></tr><tr><th>download</th><td colspan='2' class='oid'><a href='/guix/snapshot/guix-214e784b577ae91995e50a3ac949f79c1ecf6253.tar.gz'>guix-214e784b577ae91995e50a3ac949f79c1ecf6253.tar.gz</a><br/><a href='/guix/snapshot/guix-214e784b577ae91995e50a3ac949f79c1ecf6253.zip'>guix-214e784b577ae91995e50a3ac949f79c1ecf6253.zip</a><br/></td></tr></table>
<div class='commit-subject'>gnu: r-gostats: Update to 2.58.0.</div><div class='commit-msg'>* gnu/packages/bioconductor.scm (r-gostats): Update to 2.58.0.
</div><div class='diffstat-header'><a href='/guix/diff/?id=214e784b577ae91995e50a3ac949f79c1ecf6253'>Diffstat</a> (limited to 'gnu/packages/bioconductor.scm')</div><table summary='diffstat' class='diffstat'>