;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; file-like
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
le-json' variable.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/tests/docker.scm (build-tarball&amp;run-docker-test): Refer to
'guile-json-3' instead of 'guile-json'.
* gnu/tests/singularity.scm (build-tarball&amp;run-singularity-test):
Likewise.
</span></span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2019-07-04 18:05:02 +0200'>2019-07-04</span></td><td><a href='/guix/commit/gnu/tests/singularity.scm?id=dea62932bc929243dae5e8b08f4fbe0b6f70be95'>pack: 'squashfs' backend records the profile's search paths.</a><span class='msg-avail'>...<span class='msg-tooltip'>* guix/scripts/pack.scm (singularity-environment-file): New procedure.
(squashfs-image): Use it, and create /.singularity/env/90-environment.sh.
* gnu/tests/singularity.scm (run-singularity-test)["singularity run,
with environment"]: New test, currently skipped.
* gnu/tests/singularity.scm (build-tarball&amp;run-singularity-test): Add
GUILE-JSON to the profile.
</span></span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2019-06-07 09:57:19 +0200'>2019-06-07</span></td><td><a href='/guix/commit/gnu/tests/singularity.scm?id=a0f352b30f4869a7af7017b8a5011ac7602dd115'>pack: Add '--entry-point'.</a><span class='msg-avail'>...<span class='msg-tooltip'>* guix/scripts/pack.scm (self-contained-tarball): Add #:entry-point and
warn when it's true.
(squashfs-image): Add #:entry-point and honor it.
(docker-image): Add #:entry-point and honor it.
(%options, show-help): Add '--entry-point'.
(guix-pack): Honor '--entry-point' and pass #:entry-point to BUILD-IMAGE.
* gnu/tests/docker.scm (run-docker-test): Test 'docker run' with the
default entry point.
(build-tarball&amp;run-docker-test): Pass #:entry-point to 'docker-image'.
* doc/guix.texi (Invoking guix pack): Document it.
* gnu/tests/singularity.scm (run-singularity-test)["singularity run"]:
New test.
(build-tarball&amp;run-singularity-test): Pass #:entry-point to
'squashfs-image'.
</span></span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2019-06-07 09:57:19 +0200'>2019-06-07</span></td><td><a href='/guix/commit/gnu/tests/singularity.scm?id=08814aec6ae75adcd059c5235c90ad26e5d5607e'>services: Add Singularity.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/linux.scm (singularity)[source](snippet): Change file
name of setuid helpers in libexec/cli/*.exec.
[arguments]: Remove "--disable-suid".
* gnu/services/docker.scm (%singularity-activation): New variable.
(singularity-setuid-programs): New procedure.
(singularity-service-type): New variable.
* gnu/tests/singularity.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Miscellaneous Services): Document it.
</span></span></td><td>Ludovic Courtès</td></tr>