diff -Naur pigx_scrnaseq-1.1.7/configure.ac pigx_scrnaseq-1.1.7.patched/configure.ac
--- pigx_scrnaseq-1.1.7/configure.ac	2020-03-17 14:37:46.000000000 +0100
+++ pigx_scrnaseq-1.1.7.patched/configure.ac	2021-10-06 13:55:49.779271317 +0200
@@ -43,7 +43,6 @@
 find_or_override_prog([GNUBASH],         [bash])
 find_or_override_prog([SNAKEMAKE],       [snakemake])
 find_or_override_prog([PANDOC],          [pandoc])
-find_or_override_prog([PANDOC_CITEPROC], [pandoc-citeproc])
 find_or_override_prog([FASTQC],          [fastqc])
 find_or_override_prog([STAR],            [STAR])
 find_or_override_prog([SAMTOOLS],        [samtools])
diff -Naur pigx_scrnaseq-1.1.7/Makefile.in pigx_scrnaseq-1.1.7.patched/Makefile.in
--- pigx_scrnaseq-1.1.7/Makefile.in	2020-11-30 16:55:48.000000000 +0100
+++ pigx_scrnaseq-1.1.7.patched/Makefile.in	2021-10-06 13:55:52.224340194 +0200
@@ -395,7 +395,6 @@
 PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PANDOC = @PANDOC@
-PANDOC_CITEPROC = @PANDOC_CITEPROC@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PERL = @PERL@
 PYTHON = @PYTHON@
diff -Naur pigx_scrnaseq-1.1.7/pigx-scrnaseq.in pigx_scrnaseq-1.1.7.patched/pigx-scrnaseq.in
--- pigx_scrnaseq-1.1.7/pigx-scrnaseq.in	2020-11-30 16:08:55.000000000 +0100
+++ pigx_scrnaseq-1.1.7.patched/pigx-scrnaseq.in	2021-10-06 13:55:47.889218079 +0200
@@ -274,7 +274,6 @@
     if path.exists(bin): shutil.rmtree(bin)
     os.makedirs(bin, exist_ok=True)
     os.symlink('@PANDOC@', path.join(bin, "pandoc"))
-    os.symlink('@PANDOC_CITEPROC@', path.join(bin, "pandoc-citeproc"))
     os.symlink('@RSCRIPT@', path.join(bin, "Rscript"))
     os.environ['PATH'] = path.abspath(bin) + ":" + os.environ['PATH']
     os.environ['PIGX_PATH'] = path.abspath(bin) + ":" + os.environ['PATH']
uthor</option>
<option value='committer'>committer</option>
<option value='range'>range</option>
</select>
<input class='txt' type='search' size='10' name='q' value=''/>
<input type='submit' value='search'/>
</form>
</td></tr></table>
<div class='path'>path: <a href='/guix/log/?id=6b8552fd5af1a794a355cf0f3279a82b8267a202'>root</a>/<a href='/guix/log/gnu?id=6b8552fd5af1a794a355cf0f3279a82b8267a202'>gnu</a>/<a href='/guix/log/gnu/packages?id=6b8552fd5af1a794a355cf0f3279a82b8267a202'>packages</a>/<a href='/guix/log/gnu/packages/jami.scm?id=6b8552fd5af1a794a355cf0f3279a82b8267a202'>jami.scm</a></div><div class='content'><table class='list nowrap'><tr class='nohover'><th class='left'>Age</th><th class='left'>Commit message (<a href='/guix/log/gnu/packages/jami.scm?id=6b8552fd5af1a794a355cf0f3279a82b8267a202&amp;showmsg=1'>Expand</a>)</th><th class='left'>Author</th></tr>
<tr><td><span title='2021-06-14 00:24:42 -0400'>2021-06-14</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=ea0a51071e68c37a4c9c25421cf03bc2f442c67b'>gnu: Rename qtbase to qtbase-5.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-06-08 00:04:07 -0400'>2021-06-08</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=fa43419a0ffef8f6da3663a5953946762b2e6665'>gnu: jami: Update to 20210606.1.e2f9490.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-06-08 00:03:59 -0400'>2021-06-08</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=6bd47fc8265aa410595eec9b93b4385047cecf44'>gnu: jami: Always include the custom Jami patches with the sources.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-05-28 09:48:15 -0400'>2021-05-28</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=4ec964ec38d511ca203cd3c29b194d0cfb99667a'>gnu: jami-gnome: Include phases from the glib-or-gtk-build-system.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-04-10 00:55:18 -0400'>2021-04-10</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=59134f1e02dbde6d82e6204b51ca49347b8037d9'>gnu: jami-qt: Remove the custom wrap phase.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-04-02 14:17:44 -0400'>2021-04-02</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=591c930337556f1a242fc8f7a891a4409d18da84'>gnu: jami: Add debug outputs.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-04-02 11:47:17 -0400'>2021-04-02</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=532c0e745aa81b5ac5ed8cb2b4f9b02aa720d9a9'>gnu: libringclient: Disable the libwrap feature.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-04-02 07:41:16 -0400'>2021-04-02</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=e6b447cf756831e8339e6462647004d88132fa07'>gnu: Add jami-qt.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-04-02 07:41:16 -0400'>2021-04-02</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=60e64e28f3a5d8eaf5659b655af9b027eb396f1f'>gnu: jami: Update to 20210326.1.cfba013 and rename to jami-gnome.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-04-02 07:41:16 -0400'>2021-04-02</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=40a5f7904a482500840332b18917a22163750785'>gnu: libringclient: Update to 20210326.1.cfba013.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-04-02 07:41:16 -0400'>2021-04-02</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=2cfd4770afca54382de3ddd04dedd15303ad38ec'>gnu: libring: Update to 20210326.1.cfba013.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-04-02 07:41:16 -0400'>2021-04-02</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=3f742c77ef26d38bce0ce99619491ade8686a77f'>ffmpeg-jami: Apply patches from Jami 20210326.1.cfba013.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-04-02 07:41:16 -0400'>2021-04-02</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=3d913c1ed80470fde408a6f4509e8ae1277f40fb'>gnu: pjproject-jami: Fix CVE-2020-15260 and CVE-2021-21375.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2021-03-17 03:58:10 -0400'>2021-03-17</span></td><td><a href='/guix/commit/gnu/packages/jami.scm?id=1a265842e634656411bc7304c4648273f174f65e'>gnu: Use PACKAGE/INHERIT in more places.</a><span class='msg-avail'>...</span></td><td>Mark H Weaver</td></tr>