--- a/Makefile	2017-04-09 12:48:15.000000000 +0200
+++ b/Makefile	2017-06-21 14:26:02.749282787 +0200
@@ -9,8 +9,8 @@
 
 # Flags
 CXX=g++
-CXXFLAGS += -isystem ${SEQTK_ROOT} -isystem ${BOOST_ROOT} -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing
-LDFLAGS += -L${SEQTK_ROOT} -L${BOOST_ROOT}/stage/lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time 
+CXXFLAGS += -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing
+LDFLAGS += -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time 
 
 # Additional flags for release/debug
 ifeq (${PARALLEL}, 1)
@@ -23,7 +23,7 @@
 ifeq (${STATIC}, 1)
 	LDFLAGS += -static -static-libgcc -pthread -lhts -lz
 else
-	LDFLAGS += -lhts -lz -Wl,-rpath,${SEQTK_ROOT},-rpath,${BOOST_ROOT}/stage/lib
+	LDFLAGS += -lhts -lz
 endif
 ifeq (${DEBUG}, 1)
 	CXXFLAGS += -g -O0 -fno-inline -DDEBUG
@@ -41,29 +41,17 @@
 DELLYSOURCES = $(wildcard src/*.h) $(wildcard src/*.cpp)
 
 # Targets
-TARGETS = .htslib .bcftools .boost src/delly src/cov src/dpe
+TARGETS = src/delly src/cov src/dpe
 
 all:   	$(TARGETS)
 
-.htslib: $(HTSLIBSOURCES)
-	cd src/htslib && make && make lib-static && cd ../../ && touch .htslib
-
-.bcftools: $(HTSLIBSOURCES)
-	cd src/bcftools && make && cd ../../ && touch .bcftools
-
-.boost: $(BOOSTSOURCES)
-	cd src/modular-boost && ./bootstrap.sh --prefix=${PWD}/src/modular-boost --without-icu --with-libraries=iostreams,filesystem,system,program_options,date_time && ./b2 && ./b2 headers && cd ../../ && touch .boost
-
-src/delly: .htslib .bcftools .boost $(DELLYSOURCES)
-	$(CXX) $(CXXFLAGS) $@.cpp -o $@ $(LDFLAGS)
-
-src/cov: .htslib .bcftools .boost $(DELLYSOURCES)
+src/cov: $(DELLYSOURCES)
 	$(CXX) $(CXXFLAGS) $@.cpp -o $@ $(LDFLAGS)
 
-src/dpe: .htslib .bcftools .boost $(DELLYSOURCES)
+src/dpe: $(DELLYSOURCES)
 	$(CXX) $(CXXFLAGS) $@.cpp -o $@ $(LDFLAGS)
 
 clean:
 	cd src/htslib && make clean
 	cd src/modular-boost && ./b2 --clean-all
-	rm -f $(TARGETS) $(TARGETS:=.o) .htslib .boost .bcftools
+	rm -f $(TARGETS) $(TARGETS:=.o)
g/gnu?id=60953d62c0e7975aab616b07c6e9c98b687e168a'>gnu</a>/<a href='/guix/log/gnu/services?id=60953d62c0e7975aab616b07c6e9c98b687e168a'>services</a>/<a href='/guix/log/gnu/services/science.scm?id=60953d62c0e7975aab616b07c6e9c98b687e168a'>science.scm</a></div><div class='content'><table class='list nowrap'><tr class='nohover'><th class='left'>Age</th><th class='left'>Commit message (<a href='/guix/log/gnu/services/science.scm?id=60953d62c0e7975aab616b07c6e9c98b687e168a&amp;showmsg=1'>Expand</a>)</th><th class='left'>Author</th></tr>
<tr><td><span title='2021-11-30 01:08:55 +0100'>2021-11-30</span></td><td><a href='/guix/commit/gnu/services/science.scm?id=892f1b7273d57b25940700877a02618fe826cc08'>services: Accept &lt;inferior-package&gt;s in lieu of &lt;package&gt;s.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/services/authentication.scm (fprintd-configuration)
(nslcd-configuration): Substitute file-like objects for package ones.
* gnu/services/cgit.scm (cgit-configuration, opaque-cgit-configuration):
Likewise.
* gnu/services/cups.scm (package-list?, cups-configuration): Likewise.
* gnu/services/dns.scm (verify-knot-configuration)
(ddclient-configuration): Likewise.
* gnu/services/docker.scm (docker-configuration): Likewise.
* gnu/services/file-sharing.scm (transmission-daemon-configuration): Likewise.
* gnu/services/getmail.scm (getmail-configuration): Likewise.
* gnu/services/mail.scm (dovecot-configuration)
(opaque-dovecot-configuration): Likewise.
* gnu/services/messaging.scm (prosody-configuration)
(opaque-prosody-configuration): Likewise.
* gnu/services/monitoring.scm (zabbix-server-configuration)
(zabbix-agent-configuration): Likewise.
* gnu/services/networking.scm (opendht-configuration): Likewise.
* gnu/services/pm.scm (tlp-configuration): Likewise.
* gnu/services/telephony.scm (jami-configuration): Likewise.
* gnu/services/virtualization.scm (libvirt-configuration)
(qemu-guest-agent-configuration): Likewise.
* gnu/services/vpn.scm (openvpn-client-configuration): Likewise.
</span></span></td><td>Tobias Geerinckx-Rice</td></tr>
<tr><td><span title='2020-12-09 12:55:02 +0200'>2020-12-09</span></td><td><a href='/guix/commit/gnu/services/science.scm?id=533935ccf71bef93f2f146fba1b2bb6402559965'>services: science.scm: Add missing copyright headers.</a><span class='msg-avail'>...<span class='msg-tooltip'>This module was always supposed to have the GPL3 header in place.
Follow-up to 8f19e63f760fe02f9969225da2f3f3c36801218f.

* gnu/services/science.scm: Add Copyright headers.
</span></span></td><td>Efraim Flashner</td></tr>