;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2019 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages java-maths)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix git-download)
  #:use-module (guix utils)
  #:use-module (guix build-system gnu)
  #:use-module (gnu packages)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages java)
  #:use-module (gnu packages maths)
  #:use-module (gnu packages ruby))

(define-public java-jblas
  (package
    (name "java-jblas")
    (version "1.2.4")
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/mikiobraun/jblas")
                    (commit (string-append "jblas-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
                "0afh48hq8i8li5z11x415c8slwsfrlib0w1xjfbg186mximqvv3g"))))
    (build-system gnu-build-system)
    (arguments
     `(#:tests? #f                      ; there are none
       #:configure-flags
       (list (string-append "--libpath="
                            (assoc-ref %build-inputs "openblas")
                            "/lib")
             "--build-type=openblas")
       #:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'make-writable
           (lambda _
             (map make-file-writable
                  (find-files "." ".*"))
             #t))
         (add-before 'build 'setenv-JAVA_HOME
           (lambda* (#:key inputs #:allow-other-keys)
             (setenv "JAVA_HOME" (assoc-ref inputs "jdk"))
             #t))
         (add-after 'build 'build-jar
           (lambda* (#:key inputs outputs #:allow-other-keys)
             (setenv "M2_HOME" (assoc-ref outputs "out"))
             (invoke "ant" "jar" (string-append "-Dversion=" ,version))))
         (replace 'install
           (lambda* (#:key outputs #:allow-other-keys)
             (let ((target (string-append (assoc-ref outputs "out")
                                          "/share/java")))
               (mkdir-p target)
               (install-file (string-append "jblas-" ,version ".jar") target))
             #t)))))
    (inputs
     (list openblas))
    (native-inputs
     `(("ant" ,ant)
       ("ruby" ,ruby)                   ; for configure script
       ("gfortran" ,gfortran)
       ("jdk" ,icedtea "jdk")))
    (home-page "http://jblas.org")
    (synopsis "Linear algebra for Java")
    (description
     "jblas is a fast linear algebra library for Java.  jblas is based on BLAS
and LAPACK, the de-facto industry standard for matrix computations, and uses
state-of-the-art implementations for all its computational routines, making
jBLAS very fast.")
    (license license:bsd-3)))
/span></td><td><a href='/guix/commit/.mailmap?id=fce924708c31c09a1b438ae7e8b83d39c492be9a'>Update email addresses for Juliana Sims.</a><span class='msg-avail'>...<span class='msg-tooltip'>* .mailmap: Add an entry for Juliana.
* gnu/packages/admin.scm, gnu/packages/audio.scm,
gnu/packages/build-tools.scm, gnu/packages/scheme.scm: Update Juliana's email.

Signed-off-by: Ludovic Courtès &lt;ludo@gnu.org&gt;
</span></span></td><td>Juliana Sims</td></tr>
<tr><td><span title='2022-01-11 14:48:00 -0500'>2022-01-11</span></td><td><a href='/guix/commit/.mailmap?id=7f779286df7e8636d901f4734501902cc934a72f'>Update mailmap.</a><span class='msg-avail'>...<span class='msg-tooltip'>* .mailmap: Add entry for Zheng Junjie.
</span></span></td><td>Leo Famulari</td></tr>
<tr><td><span title='2021-11-06 16:03:43 +0100'>2021-11-06</span></td><td><a href='/guix/commit/.mailmap?id=567c4f4495fd1681bc6bd1ca3e9d1a87e120ac61'>Update mailmap and copyright assignments for Liliana Marie Prikler.</a><span class='msg-avail'>...<span class='msg-tooltip'>Use full names everywhere.

* .mailmap: Use full name for Liliana Marie Prikler.
* gnu/packages/zig.scm: Likewise.
</span></span></td><td>Liliana Marie Prikler</td></tr>
<tr><td><span title='2021-09-06 12:15:57 +0200'>2021-09-06</span></td><td><a href='/guix/commit/.mailmap?id=7158f8e4e9f81dbe004789018dcf06a5fe87d602'>Update mailmap.</a><span class='msg-avail'>...<span class='msg-tooltip'>* .mailmap: Add entry for Liliana Marie Prikler.
</span></span></td><td>Liliana Marie Prikler</td></tr>
<tr><td><span title='2021-09-04 12:25:17 +0200'>2021-09-04</span></td><td><a href='/guix/commit/.mailmap?id=1fd0bf60ea261fac426052386029ead0ac68cad1'>Update mailmap.</a><span class='msg-avail'>...<span class='msg-tooltip'>* .mailmap: Alias all my contributions to the same identity.
</span></span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2021-07-27 12:34:56 -0400'>2021-07-27</span></td><td><a href='/guix/commit/.mailmap?id=c0e6e8d25e3750a35bebc80469ee86e7826bd769'>Update mailmap.</a><span class='msg-avail'>...<span class='msg-tooltip'>* .mailmap: Add entry for Christine Lemmer-Webber.
</span></span></td><td>Leo Famulari</td></tr>
<tr><td><span title='2021-07-08 09:48:22 +0200'>2021-07-08</span></td><td><a href='/guix/commit/.mailmap?id=0a04c25482c4d848a6a29711fccf5682319e26aa'>mailmap: Update entries for Matthew James Kraai.</a><span class='msg-avail'>...<span class='msg-tooltip'>* .mailmap: Change name for Matthew James Kraai.
* gnu/packages/lisp-xyz.scm, gnu/packages/python-xyz.scm,
gnu/packages/rust.scm: Likewise.

Signed-off-by: Nicolas Goaziou &lt;mail@nicolasgoaziou.fr&gt;
</span></span></td><td>Matthew James Kraai</td></tr>
<tr><td><span title='2021-06-23 22:29:23 -0500'>2021-06-23</span></td><td><a href='/guix/commit/.mailmap?id=6d388103a4ed8f14f1ac6ac7a2ff22c5fa6b8cd4'>gnu: Add Sollya.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/algebra.scm (sollya): New variable.
* .mailmap: Adjust "proper email" for `git commit`.
</span></span></td><td>Eric Bavier</td></tr>
<tr><td><span title='2021-04-21 18:02:27 -0400'>2021-04-21</span></td><td><a href='/guix/commit/.mailmap?id=449844474da86b5f10a4c5e4f1744e1e3a716d6e'>Update email address for Kei.</a><span class='msg-avail'>...<span class='msg-tooltip'>* .mailmap: Remove obsolete email for Kei.
</span></span></td><td>Kei Kebreau</td></tr>