From ce7b202f9b157c173cb9c2ab8d7a4b2d4a17496a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 6 May 2021 18:55:45 +0200 Subject: gnu: Add perl-bio-db-hts. * gnu/packages/bioinformatics.scm (perl-bio-db-hts): New variable. --- gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index df317df411..60614613bd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1154,6 +1154,31 @@ converted to Alignment objects, and so on. This means that the objects provide a coordinated and extensible framework to do computational biology.") (license license:perl-license)))) +(define-public perl-bio-db-hts + (package + (name "perl-bio-db-hts") + (version "3.01") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/A/AV/AVULLO/Bio-DB-HTS-" + version ".tar.gz")) + (sha256 + (base32 + "0hjg0igfkpvh27zdkdr6pa7cqm9n6r7cwz0np74cl4wmawgvr9hj")))) + (build-system perl-build-system) + (native-inputs + `(("perl-module-build" ,perl-module-build) + ("pkg-config" ,pkg-config))) + (propagated-inputs + `(("bioperl-minimal" ,bioperl-minimal) + ("htslib" ,htslib-1.9))) + (home-page "https://metacpan.org/release/Bio-DB-HTS") + (synopsis "Perl interface to HTS library for DNA sequencing") + (description "This is a Perl interface to the HTS library for DNA +sequencing.") + (license license:asl2.0))) + (define-public python-biopython (package (name "python-biopython") -- cgit v1.2.3