From 7c990fbcb3aa291189d4e453b92ee1a208dfc5d1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 5 Jun 2021 08:50:10 +0200 Subject: gnu: r-bioassayr: Update to 1.30.0. * gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.30.0. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a546532876..4b5259eafc 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11160,14 +11160,14 @@ structures.") (define-public r-bioassayr (package (name "r-bioassayr") - (version "1.28.3") + (version "1.30.0") (source (origin (method url-fetch) (uri (bioconductor-uri "bioassayR" version)) (sha256 (base32 - "03pdb76j7c28b1h1flb40ahq7i9iha22kblq6mkl3x4xmrdgaw5y")))) + "1mlv80w8a7l8cii3dfqvanvh0qdqvcg8c1iiq4xlyvkjxfs64ka1")))) (properties `((upstream-name . "bioassayR"))) (build-system r-build-system) (propagated-inputs -- cgit v1.2.3 table>
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2023-07-18gnu: Replace texlive-latex-base with texlive-latex-bin....Although `latex-base' is clearly defined on CTAN, it isn't a proper TeX Live package. Since we're trying to follow as closely as possible this TeX distribution, we replace the package with the closest one, which is `texlive-latex-bin'. As a consequence, the #:TEXLIVE-LATEX-BASE argument becomes #:TEXLIVE-LATEX-BIN?, emphasizing the fact that the meaningful values for it are booleans. * gnu/packages/graphviz.scm (dot2tex)[propagated-inputs]: Remove TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN. * gnu/packages/plotutils.scm (asymptote)[native-inputs]: Remove TEXLIVE-LATEX-BASE, TEXLIVE-GRAPHICS, TEXLIVE-L3BACKEND. Use TEXLIVE-UPDMAP.CFG. * gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Remove TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN. * gnu/packages/tex.scm (texlive-latex-base): Deprecate variable. (texlive-hyphen-complete): (texlive-tex): (texlive-latex): (texlive-docstrip): (texlive-unicode-data): (texlive-hyphen-base): (texlive-tex-ini-files): (texlive-metafont): (texlive-modes): (texlive-knuth-lib): (texlive-latex-fonts): (texlive-etex): (texlive-plain): (texlive-kpathsea): (texlive-latexconfig): (texlive-latex-bin): (texlive-l3kernel): (texlive-l3backend): (texlive-l3packages): (texlive-luatex): (texlive-luahbtex): (texlive-babel): (texlive-cyrillic): (texlive-pdftex): (texlive-cm)[arguments]: Replace #:TEXLIVE-LATEX-BASE with #:TEXLIVE-LATEX-BIN?. (texlive-lm): (texlive-lua-alt-getopt): (texlive-luaotfload): (texlive-graphics-def): (texlive-graphics-cfg): Set #:TEXLIVE-LATEX-BIN? to #F. (texlive-graphics): (texlive-lualibs): (texlive-firstaid): (texlive-atveryend)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F. [native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX. (texlive-updmap.cfg): Remove TEXLIVE-CM, TEXLIVE-GRAPHICS, TEXLIVE-LATEX-BASE. Add TEXLIVE-LATEX-BIN. (texlive-atbegshi)[arguments]: Set #:TEXLIVE-LATEX-BIN? to #F. [native-inputs]: Add TEXLIVE-DOCSTRIP, TEXLIVE-PDFTEX. [propagated-inputs]: Remove TEXLIVE-IFTEX, TEXLIVE-INFWARERR and TEXLIVE-LTXCMDS. (texlive-everyshi)[arguments]: Build package with a temporary "latex.fmt" file. (texlive-cyrillic): Set #:TEXLIVE-LATEX-BIN? to #T. * guix/build-system/texlive.scm (default-texlive-latex-base): Rename to TEXLIVE-LATEX-BIN. (lower): Set default value for TEXLIVE-LATEX-BIN? to #TRUE. * gnu/packages/statistics.scm (r-with-tests): Remove TEXLIVE-LATEX-BASE and TEXLIVE-GRAPHICS. * doc/guix.texi (Build Systems): Document #:TEXLIVE-LATEX-BIN? argument. Remove reference to #:TEXLIVE-LATEX-BASE. Nicolas Goaziou
2023-07-18gnu: texlive-latex-needspace -> texlive-needspace....* gnu/packages/tex.scm (texlive-needspace): New variable. (texlive-latex-needspace): Deprecate variable. * gnu/packages/maths.scm (hypre)[native-inputs]: * gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Use new name. Nicolas Goaziou
2023-07-18gnu: texlive-latex-preview -> texlive-preview....* gnu/packages/tex.scm (texlive-preview): New variable. (texlive-latex-preview): Deprecate variable. * gnu/packages/graphviz.scm (dot2tex)[propagated-inputs]: * gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Use new name. Nicolas Goaziou
2023-07-18gnu: texlive-latex-varwidth -> texlive-varwidth....* gnu/packages/tex.scm (texlive-varwidth): New variable. (texlive-latex-varwidth): Deprecate variable. (texlive-adjustbox): Use new name. * gnu/packages/maths.scm (hypre)[native-inputs]: Use new name. Re-order alphabetically. * gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Use new name. Re-order alphabetically. Nicolas Goaziou
2023-07-18gnu: texlive-latex-tabulary -> texlive-tabulary....* gnu/packages/tex.scm (texlive-tabulary): New variable. (texlive-latex-tabulary): Deprecate variable. * gnu/packages/maths.scm (hypre): * gnu/packages/sphinx.scm (python-sphinx): Use new name. Nicolas Goaziou
2023-07-18gnu: texlive-latex-parskip -> texlive-parskip....* gnu/packages/tex.scm (texlive-parskip): New variable. (texlive-latex-parskip): Deprecate variable. * gnu/packages/maths.scm (hypre): * gnu/packages/plotutils.scm (asymptote): * gnu/packages/python-xyz.scm (python-nbconvert): * gnu/packages/sphinx.scm (python-sphinx): Use new name. Nicolas Goaziou
2023-07-18gnu: texlive-latex-float -> texlive-float....* gnu/packages/tex.scm (texlive-float): New variable. (texlive-latex-float): Deprecate variable. (texlive-showexpl): (texlive-minted): (texlive-apa6): * gnu/packages/docbook.scm (dblatex): * gnu/packages/maths.scm (hypre): * gnu/packages/python-xyz.scm (python-nbconvert): * gnu/packages/sphinx.scm (python-sphinx): Use new name. Nicolas Goaziou
2023-07-18gnu: texlive-latex-cmap -> texlive-cmap....* gnu/packages/tex.scm (texlive-cmap): New variable. (texlive-latex-cmap): Deprecate variable. * gnu/packages/maths.scm (hypre): * gnu/packages/sphinx.scm (python-sphinx): Use new name. Nicolas Goaziou
2023-07-18gnu: texlive-latex-upquote -> texlive-upquote....* gnu/packages/tex.scm (texlive-upquote): New variable. (texlive-latex-upquote): Deprecate variable. * gnu/packages/cran.scm (r-prereg): * gnu/packages/maths.scm (hypre): * gnu/packages/python-xyz.scm (python-nbconvert): * gnu/packages/sphinx.scm (python-sphinx): * gnu/packages/statistics.scm (r-with-tests): Use new name. Nicolas Goaziou
2023-07-18gnu: texlive-latex-geometry -> texlive-geometry....* gnu/packages/tex.scm (texlive-geometry): New variable. (texlive-latex-geometry): Deprecate variable. (texlive-xindy): * gnu/packages/chemistry.scm (yaehmop): * gnu/packages/cran.scm (r-prereg): * gnu/packages/graphviz.scm (dot2tex): * gnu/packages/maths.scm (hypre): * gnu/packages/plotutils.scm (asymptote): * gnu/packages/python-xyz.scm (python-nbconvert): * gnu/packages/sphinx.scm (python-sphinx): Use new name. Nicolas Goaziou
2023-07-18gnu: texlive-latex-framed -> texlive-framed....* gnu/packages/tex.scm (texlive-framed): New variable. (texlive-latex-framed): Deprecate variable. (texlive-minted): * gnu/packages/maths.scm (hypre): * gnu/packages/sphinx.scm (python-sphinx): Use new name. Nicolas Goaziou
2023-07-18gnu: texlive-latex-fncychap -> texlive-fncychap....* gnu/packages/tex.scm (texlive-fncychap): New variable. (texlive-latex-fncychap): Deprecate variable. * gnu/packages/maths.scm (hypre): * gnu/packages/sphinx.scm (python-sphinx): Use new name. Nicolas Goaziou