From d441454ba8923e4d76c59a57b01c285c1458b965 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 20 Jan 2024 19:52:24 +0100 Subject: gnu: Add r-methylclockdata. * gnu/packages/bioconductor.scm (r-methylclockdata): New variable. Change-Id: Id76373a9aec8276dcfd1ec3428d2ce9c81cc51d2 --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b98d831450..6355be2323 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2054,6 +2054,34 @@ gene expression indicate a role for enhancer priming in immune response\", publi in Nature Genetics, January 2018.") (license license:gpl2+))) +(define-public r-methylclockdata + (package + (name "r-methylclockdata") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "methylclockData" version + 'experiment)) + (sha256 + (base32 "0q4hiclws0fg03kwvbdwka024gghl1hbmmfficxfghslll78mc3y")))) + (properties `((upstream-name . "methylclockData"))) + (build-system r-build-system) + (propagated-inputs (list r-experimenthub r-experimenthubdata)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/isglobal-brge/methylclockData") + (synopsis "Data for methylclock package") + (description + "This package contains a collection of 9 datasets, andrews and bakulski +cord blood, blood gse35069, blood gse35069 chen, blood gse35069 complete, +combined cord blood, cord bloo d gse68456, gervin and lyle cord blood, +guintivano dlpfc and saliva gse48472. The data are used to estimate cell +counts using Extrinsic epigenetic age acceleration (EEAA) method. It also +contains a collection of 12 datasets to use with @code{MethylClock} package to +estimate chronological and gestational DNA methylation with estimators to use +with different methylation clocks.") + (license license:expat))) + (define-public r-mousegastrulationdata (package (name "r-mousegastrulationdata") -- cgit v1.2.3