From a8ea4626ae2cd7c4ed27acac5283b1c2b4a08de9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 30 Mar 2023 14:01:37 +0200 Subject: gnu: Add r-ruv. * gnu/packages/cran.scm (r-ruv): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b19313244c..4d391f8173 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1140,6 +1140,33 @@ Functions include searching for people, searching by DOI, or searching by Orcid ID.") (license license:expat))) +(define-public r-ruv + (package + (name "r-ruv") + (version "0.9.7.1") + (source (origin + (method url-fetch) + (uri (cran-uri "ruv" version)) + (sha256 + (base32 + "1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0")))) + (properties `((upstream-name . "ruv"))) + (build-system r-build-system) + (propagated-inputs (list r-ggplot2 r-gridextra r-scales)) + (home-page "https://cran.r-project.org/web/packages/ruv/index.html") + (synopsis "Detect and remove unwanted variation using negative controls") + (description + "This package implements the RUV (Remove Unwanted Variation) algorithms. +These algorithms attempt to adjust for systematic errors of unknown origin in +high-dimensional data. The algorithms were originally developed for use with +genomic data, especially microarray data, but may be useful with other types +of high-dimensional data as well. The algorithms require the user to specify +a set of negative control variables, as described in the references. The +algorithms included in this package are RUV-2, RUV-4, RUV-inv, RUV-rinv, +RUV-I, and RUV-III, along with various supporting algorithms.") + ;; Any version of the GPL. + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-waldo (package (name "r-waldo") -- cgit v1.2.3