From 81e3de01ae2ac0e9cedc5625d25fd9b3d31e07fa Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 31 May 2019 14:40:20 +0200 Subject: gnu: Add r-birewire. * gnu/packages/bioconductor.scm (r-birewire): New variable. --- gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e38d796a9..10a4079fea 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4548,3 +4548,32 @@ high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.") (license license:gpl2+))) + +(define-public r-birewire + (package + (name "r-birewire") + (version "3.16.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BiRewire" version)) + (sha256 + (base32 + "1gjb18l3gq3w8zl6r5d49hw0r1kfh9f7ghv9hz6y86aniprvb518")))) + (properties `((upstream-name . "BiRewire"))) + (build-system r-build-system) + (propagated-inputs + `(("r-igraph" ,r-igraph) + ("r-matrix" ,r-matrix) + ("r-slam" ,r-slam) + ("r-tsne" ,r-tsne))) + (home-page "https://bioconductor.org/packages/release/bioc/html/BiRewire.html") + (synopsis "Tools for randomization of bipartite graphs") + (description + "This package provides functions for bipartite network rewiring through N +consecutive switching steps and for the computation of the minimal number of +switching steps to be performed in order to maximise the dissimilarity with +respect to the original network. It includes functions for the analysis of +the introduced randomness across the switching steps and several other +routines to analyse the resulting networks and their natural projections.") + (license license:gpl3))) -- cgit v1.2.3