From 6d095c4cabfe03520ca32545632a538da9c8d6da Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 7 Jun 2018 10:47:35 +0200
Subject: gnu: star: Update to 2.6.0c.

* gnu/packages/bioinformatics.scm (star): Update to 2.6.0c.
[source]: Fetch from git.
---
 gnu/packages/bioinformatics.scm | 13 +++++++------
 1 file changed, 7 insertions(+), 6 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3628d6231a..828e965989 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5826,15 +5826,16 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.")
 (define-public star
   (package
     (name "star")
-    (version "2.6.0a")
+    (version "2.6.0c")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/alexdobin/STAR/archive/"
-                                  version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/alexdobin/STAR.git")
+                    (commit version)))
+              (file-name (string-append name "-" version "-checkout"))
               (sha256
                (base32
-                "0yci4ymy4407kjh0lqp021nzccp6r31wgrkixkmix5p130cxvc56"))
+                "04cj6jw8d9q6lk9c78wa4fky6jdlicf1d13plq7182h8vqiz8p59"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
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sion/tree/test/haketilo_test/conftest.py'>tree</a><a class='active' href='/browser-extension/commit/test/haketilo_test/conftest.py'>commit</a><a href='/browser-extension/diff/test/haketilo_test/conftest.py'>diff</a></td><td class='form'><form class='right' method='get' action='/browser-extension/log/test/haketilo_test/conftest.py'>
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<div class='path'>path: <a href='/browser-extension/commit/'>root</a>/<a href='/browser-extension/commit/test'>test</a>/<a href='/browser-extension/commit/test/haketilo_test'>haketilo_test</a>/<a href='/browser-extension/commit/test/haketilo_test/conftest.py'>conftest.py</a></div><div class='content'><div class='cgit-panel'><b>diff options</b><form method='get'><table><tr><td colspan='2'/></tr><tr><td class='label'>context:</td><td class='ctrl'><select name='context' onchange='this.form.submit();'><option value='1'>1</option><option value='2'>2</option><option value='3' selected='selected'>3</option><option value='4'>4</option><option value='5'>5</option><option value='6'>6</option><option value='7'>7</option><option value='8'>8</option><option value='9'>9</option><option value='10'>10</option><option value='15'>15</option><option value='20'>20</option><option value='25'>25</option><option value='30'>30</option><option value='35'>35</option><option value='40'>40</option></select></td></tr><tr><td class='label'>space:</td><td class='ctrl'><select name='ignorews' onchange='this.form.submit();'><option value='0' selected='selected'>include</option><option value='1'>ignore</option></select></td></tr><tr><td class='label'>mode:</td><td class='ctrl'><select name='dt' onchange='this.form.submit();'><option value='0' selected='selected'>unified</option><option value='1'>ssdiff</option><option value='2'>stat only</option></select></td></tr><tr><td/><td class='ctrl'><noscript><input type='submit' value='reload'/></noscript></td></tr></table></form></div><table summary='commit info' class='commit-info'>
<tr><th>author</th><td>Wojtek Kosior &lt;koszko@koszko.org&gt;</td><td class='right'>2022-09-20 20:18:13 +0200</td></tr>
<tr><th>committer</th><td>Wojtek Kosior &lt;koszko@koszko.org&gt;</td><td class='right'>2022-09-20 20:18:13 +0200</td></tr>
<tr><th>commit</th><td colspan='2' class='oid'><a href='/browser-extension/commit/test/haketilo_test/conftest.py?id=701d53423cc84df394c4dde962b68099a702cf2c'>701d53423cc84df394c4dde962b68099a702cf2c</a> (<a href='/browser-extension/patch/test/haketilo_test/conftest.py?id=701d53423cc84df394c4dde962b68099a702cf2c'>patch</a>)</td></tr>
<tr><th>tree</th><td colspan='2' class='oid'><a href='/browser-extension/tree/'>cc49687c2c0b1d0b9e758a1c2fd2e5a4f1fda7ff</a> /<a href='/browser-extension/tree/test/haketilo_test/conftest.py'>test/haketilo_test/conftest.py</a></td></tr>
<tr><th>parent</th><td colspan='2' class='oid'><a href='/browser-extension/commit/test/haketilo_test/conftest.py?id=cc5f582897211c510cc18851ea6bffc18bf943e4'>cc5f582897211c510cc18851ea6bffc18bf943e4</a> (<a href='/browser-extension/diff/test/haketilo_test/conftest.py?id2=cc5f582897211c510cc18851ea6bffc18bf943e4'>diff</a>)</td></tr><tr><th>download</th><td colspan='2' class='oid'><a href='/browser-extension/snapshot/browser-extension-master.tar.gz'>browser-extension-master.tar.gz</a><br/><a href='/browser-extension/snapshot/browser-extension-master.zip'>browser-extension-master.zip</a><br/></td></tr></table>
<div class='commit-subject'>bump version to 2.0.1<span class='decoration'><a class='deco' href='/browser-extension/commit/test/haketilo_test/conftest.py?id=701d53423cc84df394c4dde962b68099a702cf2c'>HEAD</a><a class='tag-annotated-deco' href='/browser-extension/tag/?h=v2.0.1'>v2.0.1</a><a class='branch-deco' href='/browser-extension/log/test/haketilo_test/conftest.py'>master</a><a class='branch-deco' href='/browser-extension/log/test/haketilo_test/conftest.py?h=koszko'>koszko</a></span></div><div class='commit-msg'></div><div class='diffstat-header'><a href='/browser-extension/diff/'>Diffstat</a> (limited to 'test/haketilo_test/conftest.py')</div><table summary='diffstat' class='diffstat'></table><div class='diffstat-summary'>0 files changed, 0 insertions, 0 deletions</div><table summary='diff' class='diff'><tr><td></td></tr></table></div> <!-- class=content -->
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