From 3506a627620fc156d0e71777aa424835486b653c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 6 Apr 2017 13:55:40 +0200 Subject: gnu: r-limma: Update to 3.30.13. * gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.13. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c51ced3319..71ff6ae9e7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6429,13 +6429,13 @@ coding changes and predict coding outcomes.") (define-public r-limma (package (name "r-limma") - (version "3.30.7") + (version "3.30.13") (source (origin (method url-fetch) (uri (bioconductor-uri "limma" version)) (sha256 (base32 - "1xg9w4lmn9n4hwyflxiwi6g969lcy569cg4z1x47crwwg7z7qdka")))) + "1ji8kb19anwq2505zii2kzqlrnk75mk1mpz8vy4s1mckzs1cz4m0")))) (build-system r-build-system) (home-page "http://bioinf.wehi.edu.au/limma") (synopsis "Package for linear models for microarray and RNA-seq data") -- cgit v1.2.3 9d570594e785e15af1ec93dd79e95e24d'>refslogtreecommitdiff
path: root/gnu/packages/emacs.scm
AgeCommit message (Expand)Author
2022-01-10gnu: emacs: Remove obsolete phase....* gnu/packages/emacs.scm (emacs)[arguments]<#:phases>: Remove 'make-compressed-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2021-12-13gnu: Simplify package inputs....This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès
2021-12-12gnu: Use librsvg-bootstrap....* gnu/packages/emacs.scm (emacs)[inputs]: Use librsvg-bootstrap. * gnu/pacakges/gtk.scm (gtk+-2, gtk+)[propagated-inputs]: Same. Efraim Flashner
2021-12-05gnu: emacs: Use 'librsvg-for-system'....* gnu/packages/emacs.scm (emacs)[inputs]: Use 'librsvg-for-system' unconditionally. Ludovic Courtès
2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus
2021-12-03gnu: emacs: Load package descriptors from packages referenced by subdirs.el...* gnu/packages/aux-files/emacs/guix-emacs.el (guix-emacs--non-core-load-path): New procedure. (guix-emacs-autoload-packages): Use it here. (guix-emacs-load-package-descriptors): New procedure. * gnu/packages/emacs.scm (emacs)[install-site-start]: Install advice to run ‘guix-emacs-load-package-descriptors’. Liliana Marie Prikler
2021-12-03gnu: emacs: Make DocView PDF work out of the box....* gnu/packages/emacs.scm (emacs)[patch-program-file-names]: Add patches for the programs “gs”, “dvipdf”, “ps2pdf” and “pdftotext”. [inputs]: Add ghostscript and poppler. Liliana Marie Prikler
2021-12-03gnu: emacs: Find real GVFS processes....* gnu/packages/emacs.scm (emacs)[#:phases]<patch-program-file-names>: Expand calls to “tramp-compat-process-running-p” so that Guix wrappers are also matched. Liliana Marie Prikler
2021-11-21gnu: emacs-xwidgets{,-next-pgtk}: Use webkitgtk-with-libsoup2....* gnu/packages/emacs.scm (emacs-xwidgets, emacs-next-pgtk)[inputs]: Replace webkitgtk with webkitgtk-with-libsoup2. * gnu/packages/webkit.scm (webkitgtk-with-libsoup2): Add further information about where this package is used and upstream tracker for libsoup3. John Kehayias
2021-10-31Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-10-24gnu: emacs: Handle pdump filenames that contain a fingerprint....* gnu/packages/emacs.scm (emacs) [restore-emacs-pdmp]: Use lax regular expressions to match files by the “.pdmp” file ending only. Adjust comment accordingly. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Morgan Smith
2021-10-12Merge remote-tracking branch 'origin/master' into core-updates-frozen.Mathieu Othacehe
2021-09-25Update copyright assignments for Liliana Marie Prikler....* doc/guix.texi: Update copyright name for Liliana Marie Prikler. * gnu/packages/build-tools.scm: Update copyright name and email for Liliana Marie Prikler. * gnu/packages/convmv.scm: Likewise. * gnu/packages/emacs-xyz.scm: Likewise. * gnu/packages/emacs.scm: Likewise. * gnu/packages/esolangs.scm: Likewise. * gnu/packages/game-development.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gnome-xyz.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/gstreamer.scm: Likewise. * gnu/packages/guile-xyz.scm: Likewise. * gnu/packages/minetest.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/patches/minetest-add-MINETEST_MOD_PATH.patch: Likewise. * gnu/packages/patches/ppsspp-disable-upgrade-and-gold.patch: Likewise. * gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Likewise. * gnu/packages/python-xyz.scm: Likewise. * gnu/packages/unicode.scm: Likewise. * gnu/packages/xorg.scm: Likewise. * gnu/services/sound.scm: Likewise. * guix/build-system/renpy.scm: Likewise. * guix/build/emacs-utils.scm: Likewise. * guix/build/renpy-build-system.scm: Likewise. Liliana Marie Prikler
2021-06-06Merge branch 'master' into core-updates... Conflicts: gnu/local.mk gnu/packages/algebra.scm gnu/packages/bioinformatics.scm gnu/packages/curl.scm gnu/packages/docbook.scm gnu/packages/emacs-xyz.scm gnu/packages/maths.scm gnu/packages/plotutils.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/radio.scm gnu/packages/readline.scm gnu/packages/tls.scm gnu/packages/xml.scm gnu/packages/xorg.scm Marius Bakke
2021-05-29gnu: emacs: Support console mice....* gnu/packages/emacs.scm (emacs)[inputs]: Add gpm. Tobias Geerinckx-Rice
2021-05-23gnu: Fix erroneous uses of 'package/inherit'....These packages use a different source/version from the inherited package, and thus should not inherit replacements. * gnu/packages/check.scm (googletest-1.8, python-pytest-runner-2): Use record inheritance instead of PACKAGE/INHERIT. * gnu/packages/crates-io.scm (rust-bindgen-0.49, rust-bytes-0.4, rust-colored-1.9.1, rust-difference-1, rust-docopt-0.8, rust-html5ever-0.23, rust-http-0.1, rust-http-body-0.1, rust-loom-0.2, rust-loom-0.1, rust-pulldown-cmark-0.0.8, rust-ring-0.13, rust-rustls-0.12, rust-sct-0.3, rust-term-0.2, rust-untrusted-0.6, rust-webpki-0.18, rust-webpki-roots-0.17, rust-webpki-roots-0.14): Likewise. * gnu/packages/emacs.scm (emacs-next, emacs-next-pgtk, guile-emacs): Likewise. * gnu/packages/guile.scm (guile-2.2.4): Likewise. * gnu/packages/maths.scm (hdf5-1.10, hdf5-1.12): Likewise. * gnu/packages/protobuf.scm (protobuf-3.6, protobuf-3.5, python-protobuf-3.6): Likewise. * gnu/packages/python-web.scm (python2-html2text): Likewise. * gnu/packages/python-xyz.scm (python-pygments/fixed, python2-numpy, python2-urwid, python2-markdown, python2-fonttools): Likewise. * gnu/packages/racket.scm (racket): Likewise. * gnu/packages/sequoia.scm (sequoia4pEp): Likewise. Marius Bakke
2021-05-09Merge branch 'master' into core-updates... Conflicts: gnu/local.mk gnu/packages/bioinformatics.scm gnu/packages/django.scm gnu/packages/gtk.scm gnu/packages/llvm.scm gnu/packages/python-web.scm gnu/packages/python.scm gnu/packages/tex.scm guix/build-system/asdf.scm guix/build/emacs-build-system.scm guix/profiles.scm Marius Bakke
2021-05-01gnu: emacs: Add coreutils and gzip to PATH....Some parts of Emacs (dired, compression handling, Tramp) shell out to commands and patching them all is a daunting task. Also, w.r.t. Tramp, we need those commands to be portable across multiple machines, which need not only be Guix machines (and even if they are, store items can be different). This patch ensures a ‘sane’ setup FSVO ‘sane’. * gnu/packages/emacs.scm (emacs)[wrap-load-path]: Rename to... [wrap-emacs-paths] ... this. Also patch PATH. Leo Prikler
2021-05-01gnu: emacs: Wrap EMACSLOADPATH....With this, the search path specification of EMACSLOADPATH does no longer depend on the version of Emacs, which should make upgrading major versions less painful. See also: - <https://bugs.gnu.org/43627> - <https://bugs.gnu.org/47458> * gnu/packages/emacs.scm (emacs)[#:phases]: Add ‘wrap-load-path’. [native-search-path]<EMACSLOADPATH>: Do not search for builtin libraries. (emacs-next)[native-search-path]: Inherit from emacs. Leo Prikler
2021-04-16Merge remote-tracking branch 'origin/master' into core-updates... Conflicts: gnu/local.mk gnu/packages/boost.scm gnu/packages/chez.scm gnu/packages/compression.scm gnu/packages/crates-io.scm gnu/packages/docbook.scm gnu/packages/engineering.scm gnu/packages/gcc.scm gnu/packages/gl.scm gnu/packages/gtk.scm gnu/packages/nettle.scm gnu/packages/python-check.scm gnu/packages/python-xyz.scm gnu/packages/radio.scm gnu/packages/rust.scm gnu/packages/sqlite.scm guix/build-system/node.scm Efraim Flashner
2021-03-25gnu: emacs: Update to 27.2....* gnu/packages/emacs.scm (emacs): Update to 27.2. Tobias Geerinckx-Rice