From 1b454f9f691a5b317e786b61bd019df436421e7a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 5 May 2019 23:46:28 +0200 Subject: gnu: r-gwascat: Update to 2.16.0. * gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.0. [propagated-inputs]: Remove r-annotationhub, r-ggbio, r-ggplot2, r-gqtlstats, r-graph, r-gviz, r-snpstats, r-summarizedexperiment, and r-variantannotation. --- gnu/packages/bioinformatics.scm | 15 +++------------ 1 file changed, 3 insertions(+), 12 deletions(-) (limited to 'gnu/packages') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ad94faf885..1139abbbbb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10302,36 +10302,27 @@ with your data.") (define-public r-gwascat (package (name "r-gwascat") - (version "2.14.0") + (version "2.16.0") (source (origin (method url-fetch) (uri (bioconductor-uri "gwascat" version)) (sha256 (base32 - "1fnyjydhicq4ayrv0lqjv48h9bd72h40s6l82g1h2ng0icwz38g0")))) + "0akb36mrybmxbb1bc9kgxbnj3cdypfylj3yzrmhjwqxml03mg61i")))) (build-system r-build-system) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) - ("r-annotationhub" ,r-annotationhub) ("r-biocgenerics" ,r-biocgenerics) ("r-biostrings" ,r-biostrings) ("r-genomeinfodb" ,r-genomeinfodb) ("r-genomicfeatures" ,r-genomicfeatures) ("r-genomicranges" ,r-genomicranges) - ("r-ggbio" ,r-ggbio) - ("r-ggplot2" ,r-ggplot2) - ("r-gqtlstats" ,r-gqtlstats) - ("r-graph" ,r-graph) - ("r-gviz" ,r-gviz) ("r-homo-sapiens" ,r-homo-sapiens) ("r-iranges" ,r-iranges) ("r-rsamtools" ,r-rsamtools) ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors) - ("r-snpstats" ,r-snpstats) - ("r-summarizedexperiment" ,r-summarizedexperiment) - ("r-variantannotation" ,r-variantannotation))) + ("r-s4vectors" ,r-s4vectors))) (home-page "https://bioconductor.org/packages/gwascat") (synopsis "Tools for data in the EMBL-EBI GWAS catalog") (description -- cgit v1.2.3