From 04340b27bae6355b90c7bdf3f3d39c99bc0d03ca Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 24 Nov 2022 12:30:16 +0100
Subject: gnu: r-bambu: Update to 3.0.2.

* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.2.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1b1a007c1b..ac1876afa0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2923,13 +2923,13 @@ Various visual and textual types of output are available.")
 (define-public r-bambu
   (package
     (name "r-bambu")
-    (version "3.0.1")
+    (version "3.0.2")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "bambu" version))
               (sha256
                (base32
-                "08vh0vbmjn1kzp10yrinn0p0ab2cjhgiagx1vhci5sf4s6p20vy4"))))
+                "0246cn5l1kxysjrzy4prfdxn71vc47a8kciqw384nm2mi3vsy4vx"))))
     (properties `((upstream-name . "bambu")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit v1.2.3

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<div class='path'>path: <a href='/guix/log/?id=726d2df2f3014c5130069055c2c3b20bf5bba814'>root</a>/<a href='/guix/log/gnu?id=726d2df2f3014c5130069055c2c3b20bf5bba814'>gnu</a>/<a href='/guix/log/gnu/packages?id=726d2df2f3014c5130069055c2c3b20bf5bba814'>packages</a>/<a href='/guix/log/gnu/packages/tcl.scm?id=726d2df2f3014c5130069055c2c3b20bf5bba814'>tcl.scm</a></div><div class='content'><table class='list nowrap'><tr class='nohover'><th class='left'>Age</th><th class='left'>Commit message (<a href='/guix/log/gnu/packages/tcl.scm?id=726d2df2f3014c5130069055c2c3b20bf5bba814&amp;showmsg=1'>Expand</a>)</th><th class='left'>Author</th></tr>
<tr><td><span title='2020-01-22 22:12:34 +0100'>2020-01-22</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=4bd428a7ce382f623784a3ff8186aadc3cebca91'>gnu: Replace uses of 'libjpeg' with 'libjpeg-turbo'.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/abiword.scm (abiword)[inputs]: Change from LIBJPEG to
LIBJPEG-TURBO.
* gnu/packages/admin.scm (testdisk)[inputs]: Likewise.
* gnu/packages/algebra.scm (giac)[inputs]: Likewise.
* gnu/packages/animation.scm (synfig)[inputs]: Likewise.
* gnu/packages/astronomy.scm (gnuastro, celestia)[inputs]: Likewise.
* gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise.
* gnu/packages/cran.scm (r-jpeg, r-tiff, r-readbitmap)[inputs]: Likewise.
* gnu/packages/cups.scm (cups-filters, hplip)[inputs]: Likewise.
* gnu/packages/display-managers.scm (slim)[inputs]: Likewise.
* gnu/packages/ebook.scm (fbreader)[inputs]: Likewise.
* gnu/packages/emacs.scm (emacs)[inputs]: Likewise.
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise.
* gnu/packages/fltk.scm (fltk, ntk)[inputs]: Likewise.
* gnu/packages/fontutils.scm (fontforge)[inputs]: Likewise.
* gnu/packages/freedesktop.scm (weston)[inputs]: Likewise.
* gnu/packages/game-development.scm (sfml, allegro, aseprite, python-pygame,
eureka, ioquake3)[inputs]: Likewise.
* gnu/packages/games.scm (adanaxisgpl, freedroidrpg, irrlicht, minetest,
fizmo, supertuxkart, gzdoom, xmoto, xonotic)[inputs]: Likewise.
* gnu/packages/gd.scm (gd, perl-gd)[inputs]: Likewise.
* gnu/packages/ghostscript.scm (lcms)[inputs]: Likewise.
(ghostscript)[inputs, native-inputs]: Likewise.
* gnu/packages/gimp.scm (gegl, gimp)[inputs]: Likewise.
* gnu/packages/gnome.scm (libgnomeui, eog, tracker-miners, gthumb)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Likewise.
* gnu/packages/graphics.scm (blender, blender-2.79, openimageio,
openscenegraph, openscenegraph-3.4, povray, fgallery)[inputs]: Likewise.
* gnu/packages/graphviz.scm (graphviz)[inputs]: Likewise.
* gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Likewise.
* gnu/packages/gtk.scm (gdk-pixbuf)[inputs]: Likewise.
* gnu/packages/image-processing.scm (dcmtk, mia, vtk, opencv, vips, nip2, vxl,
insight-toolkit)[inputs]: Likewise.
* gnu/packages/image-viewers.scm (gpicview, luminance-hdr)[inputs]: Likewise.
* gnu/packages/image.scm (jpegoptim, libtiff, leptonica, imlib2, freeimage,
vigra, libwebp, libmng, jasper, steghide, jp2a)[inputs]: Likewise.
* gnu/packages/imagemagick.scm (imagemagick, graphicsmagick)[inputs]: Likewise.
* gnu/packages/java.scm (icedtea-6, icedtea-7, openjdk9, openjdk11,
openjdk12)[inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (khtml)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/machine-learning.scm (dlib, tensorflow)[inputs]: Likewise.
* gnu/packages/mate.scm (atril, eom)[inputs]: Likewise.
* gnu/packages/maths.scm (hdf4, hdf-java, hdf-eos2, netcdf)[inputs]: Likewise.
* gnu/packages/netpbm.scm (netpbm)[inputs]: Likewise.
* gnu/packages/pdf.scm (zathura-pdf-mupdf, podofo, mupdf, fbida)[inputs]: Likewise.
* gnu/packages/photo.scm (libraw, libpano13, enblend-enfuse, darktable, hugin,
rawtherapee)[inputs]: Likewise.
* gnu/packages/prolog.scm (swi-prolog)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-hdf4, python-pillow)[inputs]: Likewise.
* gnu/packages/qt.scm (qtbase, qtwebkit)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/scanner.scm (sane-backends, xsane)[inputs]: Likewise.
* gnu/packages/scheme.scm (racket)[inputs]: Likewise.
* gnu/packages/scribus.scm (scribus)[inputs]: Likewise.
* gnu/packages/sdl.scm (sdl-image)[propagated-inputs]: Likewise.
(guile-sdl)[native-inputs]: Likewise.
* gnu/packages/spice.scm (spice-gtk)[inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[inputs]: Likewise.
* gnu/packages/tcl.scm (perl-tk)[inputs]: Likewise.
* gnu/packages/upnp.scm (readymedia)[inputs]: Likewise.
* gnu/packages/video.scm (mplayer, mpv, v4l-utils, motion)[inputs]: Likewise.
* gnu/packages/web-browsers.scm (dillo, links)[inputs]: Likewise.
* gnu/packages/web.scm (netsurf)[inputs]: Likewise.
* gnu/packages/webkit.scm (webkitgtk)[inputs]: Likewise.
* gnu/packages/wine.scm (wine)[inputs]: Likewise.
* gnu/packages/wv.scm (wv)[inputs]: Likewise.
* gnu/packages/wxwidgets.scm (wxwidgets, wxwidgets-2)[inputs]: Likewise.
* gnu/packages/xdisorg.scm (xscreensaver)[inputs]: Likewise.
* gnu/packages/xfce.scm (tumbler)[inputs]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[inputs]: Likewise.
* gnu/packages/xorg.scm (xpra)[inputs]: Likewise.
</span></span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2019-12-19 09:51:56 +0100'>2019-12-19</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=8a0e29d8b9da4a277c8f9613be85df16de9e8898'>gnu: tcl: Fix cross-compilation.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/patches/tcl-fix-cross-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tcl.scm (tcl): Apply it.
</span></span></td><td>Mathieu Othacehe</td></tr>
<tr><td><span title='2019-12-05 17:59:01 +0100'>2019-12-05</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=72c7788fcf0d619fb5e99c7da0c087af8edbd6bb'>gnu: Tcl/Tk: Update to 8.6.10.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tcl, tk): Update to 8.6.10.
</span></span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2019-10-14 10:03:19 +0200'>2019-10-14</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=c206f1914e9299b3f9a8b8be295a02f14acc67b3'>Merge remote-tracking branch 'signed/master' into core-updates</a></td><td>Mathieu Othacehe</td></tr>
<tr><td><span title='2019-10-13 18:35:59 +0200'>2019-10-13</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=068d0a1c345104983a9b43f5e2cf4f7e70ab3c07'>gnu: tcl: Update home page.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tcl)[home-page]: Use HTTPS.
</span></span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2019-09-24 08:12:54 +0200'>2019-09-24</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=ee4c8c899b91ff5a691213cb79ff181bc13fe76c'>gnu: tk: Fix cross-compilation.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tk)[arguments]: Add configure flags to fix
cross-compilation.
</span></span></td><td>Mathieu Othacehe</td></tr>
<tr><td><span title='2019-09-24 08:12:53 +0200'>2019-09-24</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=2ce30a37ad5d74e368a8db4a1f38877ee9759a02'>gnu: tcl: Fix cross-compilation.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tcl)[arguments]: Add configure flags to fix
cross-compilation.
</span></span></td><td>Mathieu Othacehe</td></tr>
<tr><td><span title='2019-06-27 23:33:48 +0200'>2019-06-27</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=5cc1075a76392666d3d733837f5c6252b1e48002'>Merge branch 'master' into core-updates</a></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2019-06-22 17:11:27 +0200'>2019-06-22</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=a5c86aa0fbb8a9fa7f5e1b79d652df54ff83229c'>gnu: Add go-github.com-nsf-gothic.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (go-github.com-nsf-gothic): New variable.
</span></span></td><td>Julien Lepiller</td></tr>
<tr><td><span title='2019-06-22 17:10:48 +0200'>2019-06-22</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=d9d836c3231be0122355f42f52f6779d07776720'>gnu: Use license: prefix in tcl.scm.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm: Use license: prefix in tcl.scm.
</span></span></td><td>Julien Lepiller</td></tr>
<tr><td><span title='2019-03-01 17:40:51 +0100'>2019-03-01</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=f5e563e50a232492e57d609a95d96081a060ea17'>Merge branch 'staging' into core-updates</a></td><td>Marius Bakke</td></tr>
<tr><td><span title='2019-02-25 02:10:55 +0100'>2019-02-25</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=345eec8203a3e784bd692a19bf2dc23728569297'>gnu: tcllib: Update to 1.19.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tcllib): Update to 1.19.
</span></span></td><td>Tobias Geerinckx-Rice</td></tr>
<tr><td><span title='2019-02-25 02:10:55 +0100'>2019-02-25</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=f86f1531c95fe05f65183e034f1ca37fff4b0a55'>gnu: tcllib: Don't use NAME in source URI.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tcllib)[source]: Hard-code NAME.
</span></span></td><td>Tobias Geerinckx-Rice</td></tr>
<tr><td><span title='2019-02-09 21:27:23 +0100'>2019-02-09</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=b5a72640d72fa8b4bc52cc24845eb23983f5f377'>gnu: Tcl/Tk: Update to 8.6.9.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tcl): Update to 8.6.9.
(tk): Update to 8.6.9.1.
[source](uri): Use VERSION-PREFIX to take only the first three components.
</span></span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2018-08-25 16:44:07 +0200'>2018-08-25</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=839167ff9d74fc490b32f6a197591964f73b65e5'>Merge branch 'staging' into core-updates</a></td><td>Marius Bakke</td></tr>
<tr><td><span title='2018-08-11 17:22:31 +0200'>2018-08-11</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=9aba9b127840a116c806a2cbac901cf8077abcd0'>Migrate search.cpan.org home pages to metacpan.org.</a><span class='msg-avail'>...<span class='msg-tooltip'>The venerable search.cpan.org has retired[0].

[0]: https://log.perl.org/2018/05/goodbye-search-dot-cpan-dot-org.html

* guix/import/cpan.scm (cpan-home): Generate metacpan.org home page URIs.
Update all previously generated ones in (gnu packages) to their
canonical new homes.
</span></span></td><td>Tobias Geerinckx-Rice</td></tr>
<tr><td><span title='2018-08-11 17:22:31 +0200'>2018-08-11</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=ab45b38feada5bf4721c8f1018b9cc9d7250069e'>gnu: Use static &amp; unversioned CPAN home pages.</a><span class='msg-avail'>...<span class='msg-tooltip'>Constructing home pages to be version-specific is not something we
really want or do elsewhere, and interferers with mass updates like the
one I'm about to make.

* gnu/packages/glib.scm (perl-net-dbus-glib)[home-page]: Use canonical
home page.
* gnu/packages/perl-check.scm (perl-test-nowarnings, perl-test-output)
(perl-test-simple, perl-test-tester)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-benchmark-timer, perl-clone)
(perl-digest-sha1, perl-file-which, perl-getopt-tabular, perl-io-string)
(perl-ipc-run3, perl-probe-perl, perl-regexp-common, perl-sys-cpu)
[home-page]: Likewise.
* gnu/packages/tcl.scm (perl-tk)[home-page]: Likewise.
* gnu/packages/tls.scm (perl-net-ssleay)[home-page]: Likewise.
* gnu/packages/web.scm (perl-www-curl)[home-page]: Likewise.
* gnu/packages/xml.scm (perl-xml-dom)[home-page]: Likewise.
* gnu/packages/xorg.scm (perl-x11-protocol-other)[home-page]: Likewise.
</span></span></td><td>Tobias Geerinckx-Rice</td></tr>
<tr><td><span title='2018-07-16 22:39:52 +0300'>2018-07-16</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=49b92a24144b207170703fd09036e893d933997f'>gnu: tk: Add symlink for 'wish' binary.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tk)[arguments]: Add custom phase to create a
symlink from 'wish' to 'wish8.6'.
[home-page]: Use https.
</span></span></td><td>Efraim Flashner</td></tr>
<tr><td><span title='2018-03-29 02:56:23 +0200'>2018-03-29</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=61565a5f4aed8a0205acfb7219273b71a9d2fd3b'>gnu: tcl, tk: Update to 8.6.8.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tcl, tk): Update to 8.6.8.
</span></span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2018-03-23 04:43:47 -0400'>2018-03-23</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=6fea8adec913f29e20acc50b6e2f24341790ce50'>gnu: tcl: Use invoke.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tcl)[arguments]: Use invoke and remove vestigial
plumbing in the 'install-private-headers' phase.
</span></span></td><td>Mark H Weaver</td></tr>
<tr><td><span title='2018-03-17 20:50:45 -0400'>2018-03-17</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=eed6985fc671e7a6410f5a44a717cd7d386e435a'>gnu: tk: Return #t from all phases.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (tk)[arguments]: Return #t from 'pre-configure' phase.
</span></span></td><td>Mark H Weaver</td></tr>
<tr><td><span title='2018-03-18 00:16:52 +0100'>2018-03-18</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=6a6db57f843e07f6b37508f0bc1c2d4c919debe0'>gnu: Switch from xproto to xorgproto.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/compton.scm (compton)[inputs]: Replace XPROTO with XORGPROTO.
* gnu/packages/enlightenment.scm (efl)[inputs]: Likewise.
* gnu/packages/gnome.scm (totem)[inputs]: Likewise.
* gnu/packages/haskell.scm (ghc-x11-xft)[inputs]: Likewise.
* gnu/packages/image-processing.scm (vtk)[inputs]: Likewise.
* gnu/packages/mate.scm (mate-control-center, mate-netbook, mate-screensaver,
mate-utils)[native-inputs]: Likewise.
* gnu/packages/xdisorg.scm (xautomation)[native-inputs]: Likewise.
* gnu/packages/xnee.scm (xnee)[inputs]: Likewise.
* gnu/packages/xorg.scm (imake, lndir, libxshmfence, libfontenc, libfs,
libxcomposite, libxdmcp, libxft, libxmu, libxpm, libxres, makedepend,
mkfontscale, sessreg, xev, xf86-video-qxl, xkbcomp-intermediate, xkbutils,
xlsfonts, xmodmap, xpr, xprop, xrandr, xset, xwd, xwininfo, xwud, xorg-rgb,
libxdamage, libxrender, libxv, libice, libxau, libxfixes, libxfont, libxi,
libxrandr, libxvmc, xorg-server, libxcursor, libxaw, twm, xinit,
xterm)[inputs]: Likewise.
(xorgproto): Move expression before all other -proto packages.
(xproto)[properties]: Mark as superseded by XORGPROTO.
</span></span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2018-02-09 01:46:34 -0500'>2018-02-09</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=efe2a2833c6d306d0c60127fdfebaff6dc415b4c'>Merge branch 'master' into core-updates</a></td><td>Mark H Weaver</td></tr>
<tr><td><span title='2018-02-06 14:42:46 +0100'>2018-02-06</span></td><td><a href='/guix/commit/gnu/packages/tcl.scm?id=9cc03bbf0d1a9f7eef77164a59a4ea768db91e97'>gnu: expect: Update to 5.45.4.</a><span class='msg-avail'>...<span class='msg-tooltip'>* gnu/packages/tcl.scm (expect): Update to 5.45.4.
</span></span></td><td>Tobias Geerinckx-Rice</td></tr>