From 43b7a033e3e96b7f3681e2693d63f1fb6b5af26e Mon Sep 17 00:00:00 2001
From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Date: Fri, 20 Jan 2023 10:55:21 +0100
Subject: gnu: Add r-tsis.

* gnu/packages/bioinformatics.scm (r-tsis): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
 gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

(limited to 'gnu/packages/bioinformatics.scm')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bac094b1a5..1d473380b2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8216,6 +8216,38 @@ clustering analysis, differential analysis, motif inference and exploration of
 single cell ATAC-seq sequencing data.")
     (license license:gpl3)))
 
+(define-public r-tsis
+  (let ((commit "24460298fbe1d26e4da390f6e4f3d4d9d62334dc")
+        (revision "1"))
+    (package
+      (name "r-tsis")
+      (version (git-version "0.2.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/wyguo/TSIS")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "17c8i25iwhldvs3c51m0wny40iffm8szzijalpwrxhzbv0xa94rb"))))
+      (properties `((upstream-name . "TSIS")))
+      (build-system r-build-system)
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/wyguo/TSIS")
+      (synopsis "Time-series isoform switch of alternative splicing")
+      (description
+       "TSIS is used for detecting transcript isoform switches in time-series
+data.  Transcript isoform switches occur when a pair of alternatively spliced
+isoforms reverse the order of their relative expression levels.  TSIS
+characterizes the transcript switch by defining the isoform switch time-points
+for any pair of transcript isoforms within a gene.  In addition, this tool
+describes the switch using five different features or metrics.  Also it
+filters the results with user’s specifications and visualizes the results
+using different plots for the user to examine further details of the
+switches.")
+      (license license:gpl3))))
+
 (define-public r-umi4cpackage
   (let ((commit "88b07d896a137418ba6c31c2474b9dbe1d86fc20")
         (revision "1"))
-- 
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