From 031fdda47af642d4316e128f9ca0c3fe2cf8b4bb Mon Sep 17 00:00:00 2001
From: zimoun <zimon.toutoune@gmail.com>
Date: Mon, 8 Mar 2021 18:57:59 +0100
Subject: gnu: r-gseabase: Move to (gnu packages bioconductor).

* gnu/packages/bioinformatics.scm (r-gseabase): Move from here...
* gnu/packages/bioconductor.scm (r-gseabase): ...to here.
---
 gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

(limited to 'gnu/packages/bioconductor.scm')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1c298d61cf..a89797adc8 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1630,6 +1630,35 @@ exploration of the results.")
 high-throughput sequencing experiments.")
     (license license:artistic2.0)))
 
+(define-public r-gseabase
+  (package
+    (name "r-gseabase")
+    (version "1.52.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "GSEABase" version))
+       (sha256
+        (base32
+         "0dawh1kjmf6921jm77j2s2phrq5237pjc4sdh8fkln89gf48zx6i"))))
+    (properties `((upstream-name . "GSEABase")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotate" ,r-annotate)
+       ("r-annotationdbi" ,r-annotationdbi)
+       ("r-biobase" ,r-biobase)
+       ("r-biocgenerics" ,r-biocgenerics)
+       ("r-graph" ,r-graph)
+       ("r-xml" ,r-xml)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/GSEABase")
+    (synopsis "Gene set enrichment data structures and methods")
+    (description
+     "This package provides classes and methods to support @dfn{Gene Set
+Enrichment Analysis} (GSEA).")
+    (license license:artistic2.0)))
+
 (define-public r-hpar
   (package
     (name "r-hpar")
-- 
cgit v1.2.3

'id' value='5eb1686537762baf8193f8702d5c78dc6114c0cc'/><select name='qt'>
<option value='grep'>log msg</option>
<option value='author'>author</option>
<option value='committer'>committer</option>
<option value='range'>range</option>
</select>
<input class='txt' type='search' size='10' name='q' value=''/>
<input type='submit' value='search'/>
</form>
</td></tr></table>
<div class='path'>path: <a href='/guix/log/?id=5eb1686537762baf8193f8702d5c78dc6114c0cc'>root</a>/<a href='/guix/log/tests?id=5eb1686537762baf8193f8702d5c78dc6114c0cc'>tests</a>/<a href='/guix/log/tests/guix-shell-export-manifest.sh?id=5eb1686537762baf8193f8702d5c78dc6114c0cc'>guix-shell-export-manifest.sh</a></div><div class='content'><table class='list nowrap'><tr class='nohover'><th class='left'>Age</th><th class='left'>Commit message (<a href='/guix/log/tests/guix-shell-export-manifest.sh?id=5eb1686537762baf8193f8702d5c78dc6114c0cc&amp;showmsg=1'>Expand</a>)</th><th class='left'>Author</th></tr>
<tr><td><span title='2022-06-16 23:57:40 +0200'>2022-06-16</span></td><td><a href='/guix/commit/tests/guix-shell-export-manifest.sh?id=925a57c5d04553ff6c514867348e7d3c5c22ca66'>shell: Fix '--export-manifest' for cached profiles and when '-p' is used.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2022-06-01 22:22:19 +0200'>2022-06-01</span></td><td><a href='/guix/commit/tests/guix-shell-export-manifest.sh?id=2acc83daa5a3dd1b4ed3f8c32ecadf1313e6fd18'>shell: '--export-manifest -D x -D y' generates a valid manifest.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2022-04-08 18:14:35 +0200'>2022-04-08</span></td><td><a href='/guix/commit/tests/guix-shell-export-manifest.sh?id=20691c70cf2c5a61af7f906b65d57a524ecfc4f3'>tests: 'guix shell --export-manifest' test no longer needs networking.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2022-04-04 22:58:04 +0200'>2022-04-04</span></td><td><a href='/guix/commit/tests/guix-shell-export-manifest.sh?id=c42b7baf13c7633b4512e94da7445299c57b247d'>shell: Add '--export-manifest'.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>