From e847f402c1b7d5ae6a2e42749616d1b83d0004fd Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 5 Jun 2018 11:14:38 +0200
Subject: gnu: java-picard-2.10.3: Delete failing build phase.

* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete
generate-jar-indices phase.
---
 gnu/packages/bioinformatics.scm | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 57e2f00a99..b2a4ab2f8f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3211,6 +3211,8 @@ VCF.")
                   (sxml xpath))
        #:phases
        (modify-phases %standard-phases
+         ;; FIXME: this phase fails with "duplicate entry: htsjdk/samtools/AbstractBAMFileIndex$1.class"
+         (delete 'generate-jar-indices)
          (add-after 'unpack 'remove-useless-build.xml
            (lambda _ (delete-file "build.xml") #t))
          ;; This is necessary to ensure that htsjdk is found when using
-- 
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