From 9bf4bb19c9f4a85fb7ea96f9f70add9b2a1513db Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 29 Mar 2019 17:43:57 +0100 Subject: gnu: Add r-abaenrichment. * gnu/packages/bioconductor.scm (r-abaenrichment): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fb7e5a95f3..cbde3b54b0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3430,3 +3430,33 @@ the annotations, and options to take gene-length or spatial clustering of genes into account. It is also possible to provide custom gene coordinates, annotations and ontologies.") (license license:gpl2+))) + +(define-public r-abaenrichment + (package + (name "r-abaenrichment") + (version "1.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ABAEnrichment" version)) + (sha256 + (base32 + "0bvanqmg1smyckh16m2qn7d68zq4j7n74sgsnbgms5jngbp9158v")))) + (properties `((upstream-name . "ABAEnrichment"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abadata" ,r-abadata) + ("r-data-table" ,r-data-table) + ("r-gofuncr" ,r-gofuncr) + ("r-gplots" ,r-gplots) + ("r-gtools" ,r-gtools) + ("r-rcpp" ,r-rcpp))) + (home-page "https://bioconductor.org/packages/ABAEnrichment/") + (synopsis "Gene expression enrichment in human brain regions") + (description + "The package ABAEnrichment is designed to test for enrichment of user +defined candidate genes in the set of expressed genes in different human brain +regions. The core function @code{aba_enrich} integrates the expression of the +candidate gene set (averaged across donors) and the structural information of +the brain using an ontology, both provided by the Allen Brain Atlas project.") + (license license:gpl2+))) -- cgit v1.2.3
path: root/gnu/packages/emacs.scm
AgeCommit message (Expand)Author
2022-05-15gnu: emacs-wide-int: Use new package style....Liliana Marie Prikler
2022-05-15gnu: emacs-no-x-toolkit: Use new package style....Liliana Marie Prikler
2022-05-15gnu: emacs-no-x: Use new package style....Liliana Marie Prikler
2022-05-15gnu: emacs-xwidgets: Use new package style....Liliana Marie Prikler
2022-05-15gnu: emacs-next-pgtk: Use new package style....Liliana Marie Prikler
2022-05-15gnu: emacs-minimal: Tidy up coding style....Liliana Marie Prikler
2022-05-15gnu: emacs-minimal: Drop meaningless input....Liliana Marie Prikler
2022-05-14gnu: emacs-minimal: Fix inputs....Liliana Marie Prikler
2022-05-14gnu: emacs: Don't error on missing commands....Liliana Marie Prikler
2022-05-14gnu: emacs-minimal: Use G-Expressions in arguments....Liliana Marie Prikler
2022-05-14gnu: emacs-next-pgtk: Define in terms of emacs-next....Liliana Marie Prikler
2022-05-14gnu: emacs-next: Update to 38d87c43c2ad727406dcfe316aac5e24e202c251....Liliana Marie Prikler
2022-05-14gnu: emacs: Add support for socket activation....Liliana Marie Prikler
2022-05-14gnu: emacs: Use new package style....Liliana Marie Prikler
2022-05-14gnu: emacs: Update to 28.1....Liliana Marie Prikler
2022-01-10gnu: emacs: Remove obsolete phase....Sarah Morgensen
2021-12-13gnu: Simplify package inputs....Ludovic Courtès
2021-12-12gnu: Use librsvg-bootstrap....Efraim Flashner
2021-12-05gnu: emacs: Use 'librsvg-for-system'....Ludovic Courtès
2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus
2021-12-03gnu: emacs: Load package descriptors from packages referenced by subdirs.el...Liliana Marie Prikler
2021-12-03gnu: emacs: Make DocView PDF work out of the box....Liliana Marie Prikler
2021-12-03gnu: emacs: Find real GVFS processes....Liliana Marie Prikler
2021-11-21gnu: emacs-xwidgets{,-next-pgtk}: Use webkitgtk-with-libsoup2....John Kehayias
2021-10-31Merge remote-tracking branch 'origin/master' into core-updates-frozenEfraim Flashner
2021-10-24gnu: emacs: Handle pdump filenames that contain a fingerprint....Morgan Smith
2021-10-12Merge remote-tracking branch 'origin/master' into core-updates-frozen.Mathieu Othacehe
2021-09-25Update copyright assignments for Liliana Marie Prikler....Liliana Marie Prikler