From 6b6f7d6a0e809c09a0cae47bfe41f2d35f6cf75b Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrustben@gmail.com>
Date: Sat, 21 Nov 2015 10:37:34 +1000
Subject: gnu: orfm: Update to 0.5.3.

* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.
---
 gnu/packages/bioinformatics.scm | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c6531d669f..a0b7864918 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2079,7 +2079,7 @@ that a read originated from a particular isoform.")
 (define-public orfm
   (package
     (name "orfm")
-    (version "0.4.1")
+    (version "0.5.3")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2087,12 +2087,16 @@ that a read originated from a particular isoform.")
                     version "/orfm-" version ".tar.gz"))
               (sha256
                (base32
-                "05fmw145snk646ly076zby0fjav0k7ysbclck5d4s9pmgcfpijc2"))))
+                "0vb6d771gl4mix8bwx919x5ayy9pkj44n7ki336nz3rz2rx4c7gk"))))
     (build-system gnu-build-system)
     (inputs `(("zlib" ,zlib)))
+    (native-inputs
+     `(("ruby-bio-commandeer" ,ruby-bio-commandeer)
+       ("ruby-rspec" ,ruby-rspec)
+       ("ruby" ,ruby)))
     (synopsis "Simple and not slow open reading frame (ORF) caller")
     (description
-     "An ORF caller finds stretches of DNA that when translated are not
+     "An ORF caller finds stretches of DNA that, when translated, are not
 interrupted by stop codons.  OrfM finds and prints these ORFs.")
     (home-page "https://github.com/wwood/OrfM")
     (license license:lgpl3+)))
-- 
cgit v1.2.3

on>
<option value='committer'>committer</option>
<option value='range'>range</option>
</select>
<input class='txt' type='search' size='10' name='q' value=''/>
<input type='submit' value='search'/>
</form>
</td></tr></table>
<div class='path'>path: <a href='/guix/log/?id=b01f6490ba963253164ca8b35a1b12f52972b2aa'>root</a>/<a href='/guix/log/scripts?id=b01f6490ba963253164ca8b35a1b12f52972b2aa'>scripts</a></div><div class='content'><table class='list nowrap'><tr class='nohover'><th class='left'>Age</th><th class='left'>Commit message (<a href='/guix/log/scripts?id=b01f6490ba963253164ca8b35a1b12f52972b2aa&amp;showmsg=1'>Expand</a>)</th><th class='left'>Author</th></tr>
<tr><td><span title='2020-12-11 19:06:53 +0100'>2020-12-11</span></td><td><a href='/guix/commit/scripts?id=fd247542215fbd10f28980f3d5255014b150e95a'>build: 'script/guix' uses our own 'guile' executable.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2018-06-09 12:02:27 +0200'>2018-06-09</span></td><td><a href='/guix/commit/scripts?id=75e24d7b0e19ab2164aecb340e82d07d2b9714e7'>pull: Install the new Guix in a profile.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2018-01-28 23:14:55 +0100'>2018-01-28</span></td><td><a href='/guix/commit/scripts?id=63666a348af5ef5190cbe9611c40f2b9188b7967'>guix: Let Emacs detect “scripts/guix.in” appropriate mode.</a><span class='msg-avail'>...</span></td><td>Mathieu Lirzin</td></tr>
<tr><td><span title='2018-01-23 15:01:15 +0100'>2018-01-23</span></td><td><a href='/guix/commit/scripts?id=6f774d481839f87178c5895ac2d661e141f879b8'>guix: Refactor script.</a><span class='msg-avail'>...</span></td><td>Mathieu Lirzin</td></tr>
<tr><td><span title='2018-01-23 10:13:16 +0100'>2018-01-23</span></td><td><a href='/guix/commit/scripts?id=cba386c1295b7054df22dfb4662b1b92f668e2c0'>build: Expand ‘scripts/guix’ at Make time.</a><span class='msg-avail'>...</span></td><td>Mathieu Lirzin</td></tr>
<tr><td><span title='2017-03-20 23:26:18 +0100'>2017-03-20</span></td><td><a href='/guix/commit/scripts?id=9437fd7399425ed281e1bfc13240288ba9078caa'>build: Install .go files to $libdir/guile/X.Y.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2016-04-06 23:21:26 +0200'>2016-04-06</span></td><td><a href='/guix/commit/scripts?id=7cffaeb60473e25a7ef8c1a8cb36e1531191873a'>challenge: Really exit with non-zero upon hash mismatch.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>