From 443110cd86f2cee8ca97894ea6bbdb519056a371 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 16 Dec 2021 22:37:49 +0100
Subject: gnu: Add r-celldex.

* gnu/packages/bioconductor.scm (r-celldex): New variable.
---
 gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bf1bae1254..c27a344311 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1146,6 +1146,35 @@ from Illumina 450k methylation arrays.")
 biscuiteer.")
     (license license:gpl3)))
 
+(define-public r-celldex
+  (package
+    (name "r-celldex")
+    (version "1.4.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "celldex" version 'experiment))
+       (sha256
+        (base32 "04w60fx3s3wlirmr65nsz6d7ig48j9fzimdr8kbdqv1g80ivdcq1"))))
+    (properties `((upstream-name . "celldex")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-annotationdbi
+           r-annotationhub
+           r-delayedarray
+           r-delayedmatrixstats
+           r-experimenthub
+           r-s4vectors
+           r-summarizedexperiment))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/LTLA/celldex")
+    (synopsis "Reference index for cell types")
+    (description
+     "This package provides a collection of reference expression datasets with
+curated cell type labels, for use in procedures like automated annotation of
+single-cell data or deconvolution of bulk RNA-seq.")
+    (license license:gpl3)))
+
 (define-public r-chromstardata
   (package
     (name "r-chromstardata")
-- 
cgit v1.2.3

9bbe4fcdc2e3085f8df9f4'/><select name='qt'>
<option value='grep'>log msg</option>
<option value='author'>author</option>
<option value='committer'>committer</option>
<option value='range'>range</option>
</select>
<input class='txt' type='search' size='10' name='q' value=''/>
<input type='submit' value='search'/>
</form>
</td></tr></table>
<div class='path'>path: <a href='/guix/log/?id=dd6eac3e47fb729ea29bbe4fcdc2e3085f8df9f4'>root</a>/<a href='/guix/log/configure.ac?id=dd6eac3e47fb729ea29bbe4fcdc2e3085f8df9f4'>configure.ac</a></div><div class='content'><table class='list nowrap'><tr class='nohover'><th class='left'>Age</th><th class='left'>Commit message (<a href='/guix/log/configure.ac?id=dd6eac3e47fb729ea29bbe4fcdc2e3085f8df9f4&amp;showmsg=1'>Expand</a>)</th><th class='left'>Author</th></tr>
<tr><td><span title='2020-08-29 16:24:17 +0200'>2020-08-29</span></td><td><a href='/guix/commit/configure.ac?id=d7965b58d25c9c7648ba5682223f32d759fdffda'>build: Remove references to the 'nix-hash' program.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2020-08-29 16:24:17 +0200'>2020-08-29</span></td><td><a href='/guix/commit/configure.ac?id=f5d3a1690cb78ce9413b78352f1030bf4801617a'>build: Remove check for Guile 2.2.1 bug.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2020-08-24 13:35:24 +0200'>2020-08-24</span></td><td><a href='/guix/commit/configure.ac?id=4c0c65acfade63ce0549115d19db4b639c1e9992'>Use "guile-zlib" and "guile-lzlib" instead of (guix config).</a><span class='msg-avail'>...</span></td><td>Mathieu Othacehe</td></tr>
<tr><td><span title='2020-06-16 11:32:53 +0200'>2020-06-16</span></td><td><a href='/guix/commit/configure.ac?id=76a841cc8bd091db741758ae5553c714f2c38543'>etc: Add committer script.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2020-05-28 00:55:00 +0200'>2020-05-28</span></td><td><a href='/guix/commit/configure.ac?id=c1dc50ab202fafedde3a6b70ce6339496ad53a51'>maint: Check whether Guile-Gcrypt is recent enough.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2020-05-14 23:05:42 -0400'>2020-05-14</span></td><td><a href='/guix/commit/configure.ac?id=cb21ae76714f1873d3b3fb40d5135f00ec104b85'>etc: indent-code.el: Use the --quick option.</a><span class='msg-avail'>...</span></td><td>Maxim Cournoyer</td></tr>
<tr><td><span title='2020-04-23 23:59:23 +0200'>2020-04-23</span></td><td><a href='/guix/commit/configure.ac?id=62bc3c5b04d43ccd24922e45b79fab00f7298e10'>build: Don't build man pages when cross-compiling.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2020-03-11 18:42:09 +0100'>2020-03-11</span></td><td><a href='/guix/commit/configure.ac?id=e688c2df3924423b67892cc9939ca099c729d1cb'>build: Require Guile 2.2.3 or later.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>