From 34a24f95ece7be7e5174513091ecd3c4974ce631 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 13 Mar 2019 13:16:48 +0100
Subject: gnu: Add r-bumphunter.

* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
---
 gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b29ae9d607..34f5ceb5aa 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2200,3 +2200,37 @@ expressed genes and estimation of the @dfn{False Discovery Rate} (FDR) using
 both the Significance Analysis of Microarrays (SAM) and the @dfn{Empirical
 Bayes Analyses of Microarrays} (EBAM).")
     (license license:lgpl2.0+)))
+
+(define-public r-bumphunter
+  (package
+    (name "r-bumphunter")
+    (version "1.24.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "bumphunter" version))
+       (sha256
+        (base32
+         "1f9vk3srffbx8jpza40nd18a4y0p0z8q40mx55dlcnddkwrqi19b"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)
+       ("r-biocgenerics" ,r-biocgenerics)
+       ("r-dorng" ,r-dorng)
+       ("r-foreach" ,r-foreach)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicfeatures" ,r-genomicfeatures)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-iranges" ,r-iranges)
+       ("r-iterators" ,r-iterators)
+       ("r-limma" ,r-limma)
+       ("r-locfit" ,r-locfit)
+       ("r-matrixstats" ,r-matrixstats)
+       ("r-s4vectors" ,r-s4vectors)))
+    (home-page "https://github.com/ririzarr/bumphunter")
+    (synopsis "Find bumps in genomic data")
+    (description
+     "This package provides tools for finding bumps in genomic data in order
+to identify differentially methylated regions in epigenetic epidemiology
+studies.")
+    (license license:artistic2.0)))
-- 
cgit v1.2.3

e='range'>range</option>
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<input class='txt' type='search' size='10' name='q' value=''/>
<input type='submit' value='search'/>
</form>
</td></tr></table>
<div class='path'>path: <a href='/guix/log/?id=213315d48594fe5e77157e8e7a51a1fc822229e6'>root</a>/<a href='/guix/log/gnu?id=213315d48594fe5e77157e8e7a51a1fc822229e6'>gnu</a>/<a href='/guix/log/gnu/packages?id=213315d48594fe5e77157e8e7a51a1fc822229e6'>packages</a>/<a href='/guix/log/gnu/packages/polkit.scm?id=213315d48594fe5e77157e8e7a51a1fc822229e6'>polkit.scm</a></div><div class='content'><table class='list nowrap'><tr class='nohover'><th class='left'>Age</th><th class='left'>Commit message (<a href='/guix/log/gnu/packages/polkit.scm?id=213315d48594fe5e77157e8e7a51a1fc822229e6&amp;showmsg=1'>Expand</a>)</th><th class='left'>Author</th></tr>
<tr><td><span title='2019-06-05 00:37:39 +0200'>2019-06-05</span></td><td><a href='/guix/commit/gnu/packages/polkit.scm?id=3588419553176daadcb59644037d169574542b42'>gnu: polkit: Update to 0.116 [fixes CVE-2019-6133].</a><span class='msg-avail'>...</span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2019-04-04 17:47:02 +0200'>2019-04-04</span></td><td><a href='/guix/commit/gnu/packages/polkit.scm?id=aff0cce9175aaf836dd78941eb17549e3bfa7188'>gnu: Move nss &amp; co. to nss.scm.</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2019-03-13 23:12:43 +0100'>2019-03-13</span></td><td><a href='/guix/commit/gnu/packages/polkit.scm?id=59e80445882f8b0379e54916f89510c0deda6698'>Remove traces of "GuixSD".</a><span class='msg-avail'>...</span></td><td>Ludovic Courtès</td></tr>
<tr><td><span title='2019-01-15 14:46:44 +0100'>2019-01-15</span></td><td><a href='/guix/commit/gnu/packages/polkit.scm?id=44d10b1f722856ab8e9b942804aa7ef33e2ef739'>gnu: Separate Python core packages from the rest.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2018-12-09 00:21:09 -0500'>2018-12-09</span></td><td><a href='/guix/commit/gnu/packages/polkit.scm?id=5d3f673db4f866564b4226046a266de36dc21dbd'>gnu: polkit: Fix CVE-2018-19788.</a><span class='msg-avail'>...</span></td><td>Leo Famulari</td></tr>
<tr><td><span title='2018-08-09 21:19:47 +0200'>2018-08-09</span></td><td><a href='/guix/commit/gnu/packages/polkit.scm?id=bcdee2dc336439de5bc90b2712d83ecc865c45d7'>gnu: polkit: Update to 0.115 [fixes CVE-2018-1116].</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>