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2017-08-02gnu: r-annotationforge: Update to 1.18.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1.
2017-08-02gnu: r-category: Update to 2.42.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1.
2017-08-02gnu: r-biocstyle: Update to 2.4.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1.
2017-08-02gnu: r-dnacopy: Update to 1.50.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1.
2017-08-02gnu: r-iranges: Update to 2.10.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2.
2017-08-02gnu: r-genomeinfodb: Update to 1.12.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2.
2017-08-02gnu: r-variantannotation: Update to 1.22.3.Roel Janssen
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3.
2017-08-02gnu: r-limma: Update to 3.32.5.Roel Janssen
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5.
2017-08-02gnu: r-biobase: Update to 2.36.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2.
2017-08-02gnu: r-annotationdbi: Update to 1.38.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2.
2017-08-02gnu: r-biomart: Update to 2.32.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1.
2017-08-02gnu: r-biocparallel: Update to 1.10.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1.
2017-08-02gnu: r-biostrings: Update to 2.44.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2.
2017-08-02gnu: r-delayedarray: Update to 0.2.7.Roel Janssen
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7.
2017-08-02gnu: r-summarizedexperiment: Update to 1.6.3.Roel Janssen
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3.
2017-08-02gnu: r-genomicalignments: Update to 1.12.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1.
2017-08-02gnu: r-rtracklayer: Update to 1.36.4.Roel Janssen
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4.
2017-08-02gnu: r-genomicfeatures: Update to 1.28.4.Roel Janssen
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4.
2017-08-02gnu: r-copywriter: Update to 2.8.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1.
2017-08-02gnu: r-sva: Update to 3.24.4.Roel Janssen
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4.
2017-08-02gnu: r-rsqlite: Update to 2.0.Roel Janssen
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02gnu: Add r-blob.Roel Janssen
* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02gnu: Add r-pkgconfig.Roel Janssen
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-01gnu: re2: Update to 2017-08-01.Marius Bakke
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
2017-08-01gnu: maim: Update to 5.4.66.Marius Bakke
* gnu/packages/xdisorg.scm (maim): Update to 5.4.66.
2017-08-01gnu: slop: Update to 7.3.48.Marius Bakke
* gnu/packages/xdisorg.scm (slop): Update to 7.3.48.
2017-08-01gnu: git: Update to 2.13.4.Marius Bakke
* gnu/packages/version-control.scm (git): Update to 2.13.4.
2017-08-01gnu: r-foreign: Update hash after upstream tarball change.Roel Janssen
* gnu/packages/statistics.scm (r-foreign): Update hash. The only difference in the tarball is the metadata. The contents are identical.
2017-08-01gnu: r-foreign: Remove duplicate recipe.Roel Janssen
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
2017-08-01gnu: rapidjson: Update to 1.1.0.Leo Famulari
* gnu/packages/web.scm (rapidjson): Update to 1.1.0. [source]: Remove snippet.
2017-08-01gnu: Add pidentd.ng0
* gnu/packages/networking.scm (pidentd): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01gnu: hyperrogue: Update to 10.0e.Kei Kebreau
* gnu/packages/games.scm (hyperrogue): Update to 10.0e. [arguments]: Adjust accordingly.
2017-08-01gnu: metabat: Limit to x86_64 and i686 only.Efraim Flashner
* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field.
2017-08-01gnu: Add emacs-yasnippet-snippets.Kyle Meyer
* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01gnu: emacs-yasnippet: Upgrade to 0.12.0.Kyle Meyer
* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0. [source]: Remove an uninstalled directory from yas-snippet-dirs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01gnu: guile-ssh: Update to 0.11.2.Ludovic Courtès
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2. [source]: Remove 'patches', 'modules', and 'snippet'. * gnu/packages/patches/guile-ssh-channel-finalization.patch, gnu/packages/patches/guile-ssh-double-free.patch, gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them.
2017-08-01gnu: artanis: Unbundled guile-json and version according to documentation.Adonay Felipe Nogueira
* gnu/packages/guile.scm (artanis): Unbundled guile-json and version according to documentation. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01gnu: python-pbr-minimal: Update to 3.0.1Muriithi Frederick Muriuki
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1 [source]: Update hash and remove patch. * gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01gnu: libgit2: Enable SHA-1 collision detection.Leo Famulari
* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC' in #:configure-flags.
2017-08-01gnu: ruby-bio-commandeer: Update to 0.2.0.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0.
2017-07-31gnu: libmicrohttpd: Update to 0.9.55.Ludovic Courtès
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55. [arguments]: Add 'add-missing-LDFLAGS' phase.
2017-07-31gnu: xf86-video-intel: Update snapshot.Ludovic Courtès
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2100efa. Introduce 'revision' variable.
2017-07-31gnu: guile-bytestructures: Install .go files to lib/guile/X.Y.Ludovic Courtès
* gnu/packages/guile.scm (guile-bytestructures)[arguments]: Install .go files to OBJECT-DIR, defined as OUT/lib/guile/X.Y/site-ccache.
2017-07-31gnu: tor: Remove '--enable-expensive-hardening' option.ng0
* gnu/packages/tor.scm (tor)[arguments]: Remove '--enable-expensive-hardening' option. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-31gnu: erlang: Update to 20.0.Peter Mikkelsen
* gnu/packages/erlang.scm (erlang): Update to 20.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-31gnu: network-manager: Add dependency on Newt.Ludovic Courtès
Suggested by Mark H Weaver. * gnu/packages/gnome.scm (network-manager)[inputs]: Add NEWT.
2017-07-31gnu: guile-git: Skip faulty tests on non-x86_64.Ludovic Courtès
Reported by Mark H Weaver. * gnu/packages/guile.scm (guile-git)[arguments]: Add 'skip-tests' phase unless on x86_64-linux.
2017-07-31gnu: libgit2: Add "debug" output.Ludovic Courtès
* gnu/packages/version-control.scm (libgit2)[outputs]: New field.
2017-07-31gnu: libgit2: Update to 0.26.0.Ludovic Courtès
* gnu/packages/version-control.scm (libgit2): Update to 0.26.0. Remove "libgit2-use-after-free.patch". * gnu/packages/patches/libgit2-use-after-free.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-31gnu: efl: Add wayland support.Efraim Flashner
* gnu/packages/enlightenment.scm (efl)[inputs]: Add wayland-protocols. Move mesa ... [propagated-inputs]: ... to here. Add libinput, libxkbcommon, wayland. [arguments]: Add flags to enable wayland, elput and drm.
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