| Age | Commit message (Expand) | Author |
|---|
| 2021-06-05 | gnu: r-ncdfflow: Update to 2.38.0....* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.38.0.
[arguments]: Remove.
| Ricardo Wurmus |
| 2021-06-05 | gnu: r-cytolib: Update to 2.4.0....* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.4.0.
[arguments]: Remove.
[native-inputs]: Remove pkg-config.
| Ricardo Wurmus |
| 2021-06-05 | gnu: r-rhdf5: Update to 2.36.0....* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.36.0.
[arguments]: Remove.
| Ricardo Wurmus |
| 2021-06-05 | gnu: r-mzr: Update to 2.26.0....* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.0.
[arguments]: Remove obsolute substitution.
| Ricardo Wurmus |
| 2021-06-05 | gnu: r-msnid: Update to 1.26.0....* gnu/packages/bioconductor.scm (r-msnid): Update to 1.26.0.
[arguments]: Set HOME variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: r-bioccheck: Update to 1.28.0....* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.28.0.
[arguments]: Remove.
| Ricardo Wurmus |
| 2021-06-05 | gnu: r-rhdf5lib: Update to 1.14.0....* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.0.
[source]: Update deletions.
[arguments]: Update substitutions.
[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-metapod....* gnu/packages/bioconductor.scm (r-metapod): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-ggtree....* gnu/packages/bioconductor.scm (r-ggtree): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-treeio....* gnu/packages/bioconductor.scm (r-treeio): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-scaledmatrix....* gnu/packages/bioconductor.scm (r-scaledmatrix): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-trajectoryutils....* gnu/packages/bioconductor.scm (r-trajectoryutils): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-restfulr....* gnu/packages/bioconductor.scm (r-restfulr): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-arrow....* gnu/packages/cran.scm (r-arrow): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-ggpointdensity....* gnu/packages/cran.scm (r-ggpointdensity): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-ggnewscale....* gnu/packages/cran.scm (r-ggnewscale): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: Add r-aplot....* gnu/packages/cran.scm (r-aplot): New variable.
| Ricardo Wurmus |
| 2021-06-05 | gnu: pigx-rnaseq: Update to 0.0.13....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.13.
[arguments]: Remove obsolete substitutions.
[inputs]: Remove fastqc and trim-galore; add hisat2 and fastp.
| Ricardo Wurmus |
| 2021-06-04 | gnu: python-scanpy: Update to 1.7.2....* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.7.2.
| Roel Janssen |
| 2021-06-04 | gnu: python-anndata: Update to 0.7.6....* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.6.
| Roel Janssen |
| 2021-06-04 | gnu: Use define-public in (gnu packages xiph)....* gnu/pakages/xiph.scm: Replace all manual package #:exports with
define-public.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Brendan Tildesley |
| 2021-06-04 | gnu: python-pydantic: Update to 1.8.2....* gnu/packages/python-xyz.scm (python-pydantic): Update to 1.8.2.
[arguments]: Disable some new tests.
[native-inputs]: Add PYTHON-PYTEST-MOCK.
[propagated-inputs]: Add PYTHON-TYPING-EXTENSIONS.
| Marius Bakke |
| 2021-06-04 | gnu: wfview: Update to 1.0....* gnu/packages/radio.scm (wfview): Update to 1.0.
| Guillaume Le Vaillant |
| 2021-06-04 | gnu: smalltalk: Find glibc even when cross-compiling....glibc is named "cross-libc" instead of "libc" when cross-compiling. Smalltalk
still fails to cross-compile though.
* gnu/packages/smalltalk.scm
(smalltalk)[arguments]{phases}<#:fix-libc>: Also search for
"cross-libc" instead of only "libc" in 'inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Maxime Devos |
| 2021-06-04 | gnu: smalltalk: Move 'zip' from 'inputs' to 'native-inputs'....The 'zip' package is not in the references of 'smalltalk'.
As such, it probably should be a native input, not a regular
input. This can be confirmed by trying to cross-compile
the 'smalltalk' package, without this commit. The configure
script will ask to install InfoZIP.
* gnu/packages/smalltalk.scm
(smalltalk)[inputs]{zip}: Move to ...
(smalltalk)[native-inputs]{zip} ... here.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Maxime Devos |
| 2021-06-04 | gnu: ding: Use 'inputs' in build phases instead of '%build-inputs'....In build phases, the former is preferred.
* gnu/packages/dictionaries.scm
(ding)[arguments]<#:phases>{install}: Use 'inputs' argument instead
of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Maxime Devos |
| 2021-06-04 | gnu: qemacs: Use 'native-inputs' instead of '%build-inputs'....In build phases, the former (or 'inputs', as appropriate) is preferred.
* gnu/packages/text-editors.scm
(qemacs)[arguments]<#:phases>{install-extra-documentation}: Use
'native-inputs' argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Maxime Devos |
| 2021-06-04 | gnu: neovim: Use 'inputs' in phases instead of '%build-inputs'....In build phases, the former is preferred.
* gnu/packages/vim.scm
(neovim)[arguments]<#:phases>{set-lua-path}: Use 'inputs'
argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Maxime Devos |
| 2021-06-04 | gnu: smalltalk: Use 'inputs' in phases instead of '%build-inputs'....In build phases, the former is preferred.
* gnu/packages/smalltalk.scm
(smalltalk)[arguments]<#:phases>{fix-libc}: Use 'inputs'
argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Maxime Devos |
| 2021-06-04 | gnu: ci: Use 'inputs' in build phases instead of '%build-inputs'....In build phases, the former is preferred.
* gnu/packages/ci.scm
(cuirass)[arguments]<#:phases>{wrap-program}: Use 'inputs'
argument instead of '%build-inputs'.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Maxime Devos |
| 2021-06-04 | gnu: Add pigx-sars-cov2-ww....* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): New variable.
| Ricardo Wurmus |
| 2021-06-04 | gnu: sbcl-nibbles: Update to 0.14-2.dad2524....* gnu/packages/lisp-xyz.scm (sbcl-nibbles): Update to 0.14-2.dad2524.
| Guillaume Le Vaillant |
| 2021-06-03 | gnu: remmina: Update to 1.4.18....* gnu/packages/vnc.scm (remmina)[version]: Update to 1.4.18.
| Raghav Gururajan |
| 2021-06-03 | gnu: gajim-omemo: Update to 2.7.14....* gnu/packages/messaging.scm (gajim-omemo)[version]: Update to 2.7.14.
| Raghav Gururajan |
| 2021-06-03 | gnu: linux-libre 4.4: Update to 4.4.271....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.271.
(linux-libre-4.4-pristine-source): Update hash.
| Leo Famulari |
| 2021-06-03 | gnu: linux-libre 4.9: Update to 4.9.271....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.271.
(linux-libre-4.9-pristine-source): Update hash.
| Leo Famulari |
| 2021-06-03 | gnu: linux-libre 4.14: Update to 4.14.235....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.235.
(linux-libre-4.14-pristine-source): Update hash.
| Leo Famulari |
| 2021-06-03 | gnu: linux-libre 4.19: Update to 4.19.193....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.193.
(linux-libre-4.19-pristine-source): Update hash.
| Leo Famulari |
| 2021-06-03 | gnu: linux-libre 5.4: Update to 5.4.124....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.124.
(linux-libre-5.4-pristine-source): Update hash.
| Leo Famulari |
| 2021-06-03 | gnu: linux-libre 5.10: Update to 5.10.42....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.42.
(linux-libre-5.10-pristine-source): Update hash.
(deblob-scripts-5.10): Update hash.
| Leo Famulari |
| 2021-06-03 | gnu: linux-libre: Update to 5.12.9....* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.9.
(linux-libre-5.12-pristine-source): Update hash.
(deblob-scripts-5.12): Update hash.
| Leo Famulari |
| 2021-06-03 | gnu: komikku: Update to 0.29.0....* gnu/packages/gnome.scm (komikku): Update to 0.29.0.
| Leo Prikler |
| 2021-06-03 | gnu: emacs-calibredb: Update to 2.10.0....* gnu/packages/emacs-xyz.scm (emacs-calibredb): Update to 2.10.0.
| Nicolas Goaziou |
| 2021-06-03 | gnu: Add rfcat....* gnu/packages/radio.scm (rfcat): New variable.
| Guillaume Le Vaillant |
| 2021-06-03 | gnu: rasdaemon: Update to 0.6.7....* gnu/packages/linux.scm (rasdaemon): Update to 0.6.7.
[arguments]: Add a "--with-sysconfdefdir" configure flag.
| Tobias Geerinckx-Rice |
| 2021-06-03 | gnu: php: Update to 7.4.20....* gnu/packages/php.scm (php): Update to 7.4.20.
| Tobias Geerinckx-Rice |
| 2021-06-03 | gnu: fltk: Update to 1.3.6....* gnu/packages/fltk.scm (fltk): Update to 1.3.6.
| Tobias Geerinckx-Rice |
| 2021-06-03 | gnu: amule: Use HTTPS home page....* gnu/packages/networking.scm (amule)[home-page]: Use HTTPS.
| Tobias Geerinckx-Rice |
| 2021-06-03 | gnu: amule: Update to 2.3.3....* gnu/packages/networking.scm (amule): Update to 2.3.3.
[source]: Remove patch.
* gnu/packages/patches/amule-crypto-6.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Tobias Geerinckx-Rice |
| 2021-06-03 | gnu: mtools: Update to 4.0.29....* gnu/packages/mtools.scm (mtools): Update to 4.0.29.
| Tobias Geerinckx-Rice |
