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2019-01-25gnu: python2-warpedlmm: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python2-warpedlmm)[source]: Use PYPI-URI.
2019-01-25gnu: attic: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/backup.scm (attic)[source]: Use PYPI-URI.
2019-01-25gnu: graphios: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/admin.scm (graphios)[source]: Use PYPI-URI.
2019-01-25gnu: python-sqlalchemy: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
2019-01-25gnu: python-pyaudio: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/audio.scm (python-pyaudio)[source]: Use PYPI-URI.
2019-01-25gnu: femtolisp: Use INVOKE.Ricardo Wurmus
* gnu/packages/scheme.scm (femtolisp)[arguments]: Remove "bootstrap" phase; use INVOKE and return #T unconditionally.
2019-01-25gnu: linkchecker: Fix most test failures.Christopher Baines
Add a patch to skip more tests that require the network. Along with some other changes, this gets all but of one of the tests passing. The remaining test is broken due to a problem with the Python package in Guix, which is fixed by [1] which is currently on the core-updates branch. This patch doesn't work on core-updates due to python2-miniboa not being present. 1: d453b0e11d3f001a8160a7d126fdbf40e45d5042 * gnu/packages/python.scm (linkchecker)[source]: Add patch. [native-inputs]: Add more inputs required for the tests. [arguments]: Enable the tests, move the 'check phase after 'install. Test using the installed software, and use py.test.
2019-01-25gnu: dealii-openmpi: Setup MPI for tests.Eric Bavier
* gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
2019-01-25superlu-dist: Upgrade to 6.1.0.Eric Bavier
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file. * gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove extraneous 'use-modules' in snippet. [build-system]: Change to cmake-build-system. [propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ... [inputs]: ...here. Add openblas and combinatorial-blas. [arguments]: Replace 'configure' phase with #:configure-flags. Add 'set-c++-standard' and 'omp-setup' phases. Remove 'create-install-directories, 'check', and 'install' phases, which are now handled by cmake. * gnu/local.mk (dist_patch_DATA): Add patch.
2019-01-25scotch: Upgrade to 6.0.6.Eric Bavier
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6. [source]: Remove patches that have been fixed upstream. [arguments]: Add 'install-metis' phase. [outputs]: New field. (pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'. * gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch, gnu/packages/patches/scotch-test-threading.patch: Delete files. * gnu/packages/patches/scotch-integer-declarations.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust as necessary.
2019-01-25gnu: Add Combinatorial BLAS.Eric Bavier
* gnu/packages/maths.scm (combinatorial-blas): New variable. * gnu/packages/patches/combinatorial-blas-awpm.patch, gnu/packages/patches/combinatorial-blas-io-fix.patch: New files * gnu/local.mk(dist_patch_DATA): Add them.
2019-01-25linux-modules: module-soft-dependencies: Remove colon from section names.Danny Milosavljevic
Follow-up to 1a5f46621b44aa1458ad7acd4eca5fe1d4574f92. * gnu/build/linux-modules.scm (module-soft-dependencies): Remove colon from section names.
2019-01-25linux-modules: Add module-soft-dependencies.Danny Milosavljevic
* gnu/build/linux-modules.scm (not-softdep-whitespace): New variable. (module-soft-dependencies): New procedure.
2019-01-25gnu: Add stepmania.Nicolas Goaziou
* gnu/packages/games.scm (stepmania): * gnu/packages/video.scm (ffmpeg-for-stepmania): New variables.
2019-01-25gnu: kcoreaddons: Fix broken test.Ricardo Wurmus
* gnu/packages/kde-frameworks.scm (kcoreaddons)[arguments]: Add build phase "fix-broken-test".
2019-01-25gnu: infiniband-diags: Remove custom bootstrap phase.Ricardo Wurmus
* gnu/packages/fabric-management.scm (infiniband-diags)[arguments]: Remove "autotools" phase.
2019-01-25gnu: gpgme: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/gnupg.scm (gpgme): Update to 1.12.0.
2019-01-25gnu: gpgme: Add patch to fix qgpgme tests.Ricardo Wurmus
* gnu/packages/gnupg.scm (gpgme)[source]: Add upstream patch.
2019-01-25gnu: pcb-rnd: Use INVOKE.Ricardo Wurmus
* gnu/packages/engineering.scm (pcb-rnd)[arguments]: Use INVOKE.
2019-01-25gnu: proplib: Use INVOKE.Ricardo Wurmus
* gnu/packages/embedded.scm (proplib)[arguments]: Use INVOKE.
2019-01-25gnu: jimtcl: Use INVOKE.Ricardo Wurmus
* gnu/packages/embedded.scm (jimtcl)[arguments]: Use INVOKE.
2019-01-25gnu: greenisland: Use INVOKE.Ricardo Wurmus
* gnu/packages/display-managers.scm (greenisland)[arguments]: Use INVOKE in check phase.
2019-01-25gnu: assword: Use INVOKE.Ricardo Wurmus
* gnu/packages/password-utils.scm (assword)[arguments]: Use INVOKE.
2019-01-25gnu: python-oslosphinx: Use INVOKE.Ricardo Wurmus
* gnu/packages/openstack.scm (python-oslosphinx)[arguments]: Use INVOKE.
2019-01-25gnu: python-reno: Use INVOKE.Ricardo Wurmus
* gnu/packages/openstack.scm (python-reno)[arguments]: Use INVOKE. [native-inputs]: Replace "git" with "git-minimal".
2019-01-25gnu: Add ghc-libmpd.Gabriel Hondet
* gnu/packages/haskell.scm (ghc-libmpd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-25gnu: python-pyopenssl: Update to 19.0.0.Ricardo Wurmus
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 19.0.0. [arguments]: Use INVOKE.
2019-01-25gnu: python2-pyqt-4: Use INVOKE.Ricardo Wurmus
* gnu/packages/qt.scm (python2-pyqt-4)[arguments]: Use INVOKE.
2019-01-25gnu: qwt: Use INVOKE.Ricardo Wurmus
* gnu/packages/qt.scm (qwt)[arguments]: Use INVOKE.
2019-01-25gnu: ldb: Use INVOKE.Ricardo Wurmus
* gnu/packages/samba.scm (ldb)[arguments]: Use INVOKE.
2019-01-25gnu: tevent: Use INVOKE.Ricardo Wurmus
* gnu/packages/samba.scm (tevent)[arguments]: Use INVOKE.
2019-01-25gnu: talloc/static: Use INVOKE.Ricardo Wurmus
* gnu/packages/samba.scm (talloc/static)[arguments]: Use INVOKE in the build phase.
2019-01-25gnu: tre: Use INVOKE.Ricardo Wurmus
* gnu/packages/regex.scm (tre)[arguments]: Use INVOKE.
2019-01-25gnu: python-rdflib: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/rdf.scm (python-rdflib)[source]: Use PYPI-URI. [arguments]: Use INVOKE in commented build phase.
2019-01-25gnu: ocaml-utop: Use INVOKE.Ricardo Wurmus
* gnu/packages/ocaml.scm (ocaml-utop)[arguments]: Use INVOKE.
2019-01-25gnu: ocaml-zed: Use INVOKE.Ricardo Wurmus
* gnu/packages/ocaml.scm (ocaml-zed)[arguments]: Use INVOKE in build phases.
2019-01-25gnu: ocaml-zarith: Use INVOKE.Ricardo Wurmus
* gnu/packages/ocaml.scm (ocaml-zarith)[arguments]: Use INVOKE.
2019-01-25gnu: camlp4-4.02: Use INVOKE.Ricardo Wurmus
* gnu/packages/ocaml.scm (camlp4-4.02)[arguments]: Use INVOKE in build phases.
2019-01-25gnu: ocaml-4.01: Use INVOKE.Ricardo Wurmus
* gnu/packages/ocaml.scm (ocaml-4.01)[arguments]: Use INVOKE in build phases.
2019-01-25gnu: ocaml-4.02: Use INVOKE.Ricardo Wurmus
* gnu/packages/ocaml.scm (ocaml-4.02)[arguments]: Use INVOKE in build phases.
2019-01-25gnu: tomsfastmath: Use INVOKE.Ricardo Wurmus
* gnu/packages/multiprecision.scm (tomsfastmath)[arguments]: Use INVOKE in "check" phase.
2019-01-25gnu: freetalk: Remove custom bootstrap phase.Ricardo Wurmus
* gnu/packages/messaging.scm (freetalk)[arguments]: Remove "autogen" phase.
2019-01-25gnu: perl-net-psyc: Update to 1.3.Ricardo Wurmus
* gnu/packages/messaging.scm (perl-net-psyc): Update to 1.3. [native-inputs]: Add unzip. [arguments]: Use INVOKE in build phase.
2019-01-25gnu: dino: Update to 0.0-4.8e14ac6.Ricardo Wurmus
* gnu/packages/messaging.scm (dino): Update to 0.0-4.8e14ac6. [arguments]: Use INVOKE in build phases. [inputs]: Add qrencode; replace sqlite with sqlite-with-column-metadata.
2019-01-25gnu: bitlbee-discord: Do not run autogen.sh in custom autogen phase.Ricardo Wurmus
* gnu/packages/messaging.scm (bitlbee-discord)[arguments]: Rename "autogen" phase to "patch-autogen"; don't invoke "autogen.sh" script as it is invoked in the "bootstrap" phase; return #T from "patch-autogen" phase.
2019-01-25gnu: bitlbee: Use INVOKE.Ricardo Wurmus
* gnu/packages/messaging.scm (bitlbee)[arguments]: Use INVOKE.
2019-01-25gnu: ccl: Unconditionally return #T from build phases.Ricardo Wurmus
* gnu/packages/lisp.scm (ccl)[arguments]: Use INVOKE and return #T from build phases.
2019-01-25gnu: python-lirc: Update to 1.2.1-2.c28708b.Ricardo Wurmus
* gnu/packages/lirc.scm (python-lirc, python2-lirc): Update to 1.2.1-2.c28708b. [arguments]: Use INVOKE.
2019-01-25gnu: python-pygpgme: Use INVOKE.Ricardo Wurmus
* gnu/packages/gnupg.scm (python-pygpgme)[arguments]: Use INVOKE.
2019-01-25gnu: brdf-explorer: Unconditionally return #T from build phases.Ricardo Wurmus
* gnu/packages/graphics.scm (brdf-explorer)[arguments]: Use INVOKE and return #T.
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