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2019-03-06gnu: r-geneplotter: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here... * gnu/packages/bioconductor.scm (r-geneplotter): ...to here. Ricardo Wurmus
2019-03-06gnu: Add guile-stis-parser....* gnu/packages/guile-xyz.scm (guile-stis-parser): New variable. Ricardo Wurmus
2019-03-06gnu: r-copynumber: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-copynumber): Move from here... * gnu/packages/bioconductor.scm (r-copynumber): ...to here. Ricardo Wurmus
2019-03-06gnu: Update copyright headers....This is a follow-up to commit 1fe9a36173335b559c695357bc8d884f1d4b144a. * gnu/packages/bioconductor.scm: Update copyright header to account for moved package. Ricardo Wurmus
2019-03-06gnu: font-gnu-unifont: Update to 12.0.01....* gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.0.01. Efraim Flashner
2019-03-06gnu: cabextract: Don't use NAME in source URI....* gnu/packages/compression.scm (cabextract)[source]: Hard-code NAME. Tobias Geerinckx-Rice
2019-03-06gnu: cabextract: Update to 1.9.1....* gnu/packages/compression.scm (cabextract): Update to 1.9.1. Tobias Geerinckx-Rice
2019-03-06gnu: lcov: Update to 1.14....* gnu/packages/code.scm (lcov): Update to 1.14. Tobias Geerinckx-Rice
2019-03-06gnu: python-mako: Update home page....* gnu/packages/python-xyz.scm (python-mako)[home-page]: Use HTTPS. Marius Bakke
2019-03-06gnu: fuseiso: Fix typo....* gnu/packages/linux.scm (fuseiso)[synopsis]: s/imsages/images. Marius Bakke
2019-03-06gnu: valgrind: Add download mirror....* gnu/packages/valgrind.scm (valgrind)[source](uri): Add mirror. Marius Bakke
2019-03-06gnu: bismark: Update to 0.20.1....* gnu/packages/bioinformatics.scm (bismark): Update to 0.20.1. [source]: Remove obsolete snippet. [arguments]: Add build phase "replace-plotly.js" and add requried modules; adjust "install" phase. [inputs]: Add perl-carp and perl-getopt-long. [native-inputs]: Add plotly.js and uglify-js. Ricardo Wurmus
2019-03-06gnu: Add fuseiso....* gnu/packages/linux.scm (fuseiso): New variable. Pierre Neidhardt
2019-03-06gnu: Add r-scde....* gnu/packages/bioinformatics.scm (r-scde): New variable. Ricardo Wurmus
2019-03-06gnu: Add bowtie1....* gnu/packages/bioinformatics.scm (bowtie1): New variable. Ricardo Wurmus
2019-03-06gnu: octave, octave-cli: Update to 5.1.0....* gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0. Kei Kebreau
2019-03-06gnu: crawl, crawl-tiles: Update to 0.23.1....* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.23.1. [native-inputs]: Add python and python-pyyaml. [arguments]: Add 'patch-python' phase, modify the 'check' phase and move the 'check' phase back after the 'build' phase. Kei Kebreau
2019-03-06gnu: perl-czplib: Fix installation directory....* gnu/packages/perl.scm (perl-czplib)[arguments]: Fix installation directory. Ricardo Wurmus
2019-03-06gnu: Add guile-studio....* gnu/packages/guile-xyz.scm (guile-studio): New variable. Ricardo Wurmus
2019-03-06gnu: Add genrich....* gnu/packages/bioinformatics.scm (genrich): New variable. Ricardo Wurmus
2019-03-06gnu: r-dnacopy: Remove duplicate definition....Reported by Christopher Baines <mail@cbaines.net>. * gnu/packages/bioinformatics.scm (r-dnacopy): Remove variable. Ricardo Wurmus
2019-03-06gnu: Add r-org-dr-eg-db....* gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable. Ricardo Wurmus
2019-03-06gnu: java-eclipse-jdt-core: Update to 3.16.0....* gnu/packages/java.scm (java-eclipse-jdt-core): Update to 3.16.0. Ricardo Wurmus
2019-03-06gnu: java-eclipse-core-resources: Update to 3.13.200....* gnu/packages/java.scm (java-eclipse-core-resources): Update to 3.13.200. Ricardo Wurmus
2019-03-06gnu: java-eclipse-core-runtime: Update to 3.15.100....* gnu/packages/java.scm (java-eclipse-core-runtime): Update to 3.15.100. Ricardo Wurmus
2019-03-06gnu: java-eclipse-equinox-common: Update to 3.10.200....* gnu/packages/java.scm (java-eclipse-equinox-common): Update to 3.10.200. Ricardo Wurmus
2019-03-06gnu: shaderc: Update to 2018.0....* gnu/packages/vulkan.scm (shaderc): Update to 2018.0. Rutger Helling
2019-03-06gnu: spirv-tools: Update to 2019.1....* gnu/packages/vulkan.scm (spirv-tools): Update to 2019.1. [arguments]: Add 'fixgcc7 phase. [native-inputs]: Add gcc-7. Rutger Helling
2019-03-06gnu: spirv-headers: Update to commit 8bea0a2....* gnu/packages/vulkan.scm (spirv-headers): Update to commit 8bea0a2. Rutger Helling
2019-03-06gnu: glslang: Update to 7.11.3113....* gnu/packages/vulkan.scm (glslang): Update to 7.11.3113. Rutger Helling
2019-03-05gnu: MPD: Update to 0.21.5....* gnu/packages/mpd.scm (mpd): Update to 0.21.5. Leo Famulari
2019-03-05gnu: FFmpeg: Build with AV1 support....* gnu/packages/video.scm (ffmpeg)[inputs]: Add libaom. [arguments]: Pass '--enable-libaom' to #:configure-flags. (ffmpeg-3.4)[inputs, arguments]: Filter out libaom. Arne Babenhauserheide
2019-03-05gnu: Add libaom....* gnu/packages/video.scm (libaom): New variable. Co-authored-by: Leo Famulari <leo@famulari.name> Arne Babenhauserheide
2019-03-06gnu: you-get: Update to 0.4.1256....* gnu/packages/video.scm (you-get): Update to 0.4.1256. Tobias Geerinckx-Rice
2019-03-06gnu: youtube-dl: Update to 2019.03.01....* gnu/packages/video.scm (youtube-dl): Update to 2019.03.01. Tobias Geerinckx-Rice
2019-03-06gnu: plantuml: Update to 1.2019.2....* gnu/packages/uml.scm (plantuml): Update to 1.2019.2. Tobias Geerinckx-Rice
2019-03-06gnu: xinit: Update to 1.4.1....* gnu/packages/xorg.scm (xinit): Update to 1.4.1. Tobias Geerinckx-Rice
2019-03-06gnu: lxc: Fix documentation directory....* gnu/packages/virtualization.scm (lxc)[arguments]: Set ‘--docdir’ in #:configure-flags. Tobias Geerinckx-Rice
2019-03-06gnu: lxc: Update to 3.1.0....* gnu/packages/virtualization.scm (lxc): Update to 3.1.0. Tobias Geerinckx-Rice
2019-03-05gnu: dav1d: Update to 0.2.0....* gnu/packages/video.scm (dav1d): Update to 0.2.0. [source]: Add alternate URL. Leo Famulari
2019-03-05artwork: Update snapshot to b975164....* gnu/artwork.scm (%artwork-repository): Update to b975164. Ludovic Courtès
2019-03-05gnu: singularity: Leave PATH unchanged....Previously 'singularity help' & co. would all fail on Guix System because Coreutils, grep, etc. were not found in $PATH. * gnu/packages/linux.scm (singularity)[source](snippet): Remove "PATH" setting from 'bin/singularity.in'. Ludovic Courtès
2019-03-05gnu: singularity: Patch 'Makefile.in' in a snippet....* gnu/packages/linux.scm (singularity)[source](snippet, modules): New fields. [arguments]: Remove 'disable-install-hook' phase. Ludovic Courtès
2019-03-05gnu: wpa-supplicant: Add 'cpe-name' property....* gnu/packages/admin.scm (wpa-supplicant-minimal)[properties]: New field. Ludovic Courtès
2019-03-05gnu: Syncthing: Update to 1.1.0....* gnu/packages/syncthing.scm (syncthing): Update to 1.1.0. Leo Famulari
2019-03-05gnu: emacs-no-x-toolkit: Fix configure flags....* gnu/packages/emacs.scm (emacs-no-x-toolkit)[arguments]: Don't lose custom configure flags. Efraim Flashner
2019-03-05gnu: emacs-disk-usage: Update to 1.3.0....* gnu/packages/emacs-xyz.scm (emacs-disk-usage): Update to 1.3.0. Pierre Neidhardt
2019-03-05gnu: thinkfan: Let the build system handle rcscripts/....This moves them from /share/thinkfan to their conventional locations in /etc and /lib; the former was an arbitrary Guixism anyway. * gnu/packages/linux.scm (thinkfan)[arguments]: Re-write 'install-rc-scripts' as 'create-init-scripts' and move it after the 'unpack' phase. Tobias Geerinckx-Rice
2019-03-05gnu: thinkfan: Update to 1.0.2....* gnu/packages/linux.scm (thinkfan): Update to 1.0.2. [arguments]: Adjust source directory. Tobias Geerinckx-Rice
2019-03-05gnu: iucode-tool: Update to 2.3.1....* gnu/packages/linux.scm (iucode-tool): Update to 2.3.1. Tobias Geerinckx-Rice
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