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2023-04-22gnu: bmake: Switch to G-Exps.Josselin Poiret
* gnu/packages/build-tools.scm (bmake): Switch to G-Exps. Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-22gnu: guile-next: Fix build failure.Josselin Poiret
* gnu/packages/guile.scm (guile-next): Fix build failure. Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-22gnu: guile-fibers-next: Update to 36a6cc7079 to fix build failure.Josselin Poiret
* gnu/packages/guile-xyz.scm (guile-fibers-next): Update it. Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-22Revert "gnu: icecat: Update to 102.10.0-guix0-preview1 [security fixes]."Jonathan Brielmaier
This reverts commit e94dcbf3c28588eab25dfa1e017d792c09f68488. "gnu: icecat: Update to 102.10.0-guix0-preview1 [security fixes]." was already pushed as 3ab983d630a95a29b9418b1ba8a26e5ca2836ec0. And the `icecat-102.9.0-source` was removed in "gnu: icedove: Update to 102.10.0 [security fixes]." a741b554cb66cd053a130b8b5b5926a30bec9d48.
2023-04-22gnu: qgis: Fix build.Guillaume Le Vaillant
* gnu/packages/geo.scm (qgis)[arguments]: Update 'configure-pyqt5-sip-path' phase. Disable a few more failing tests in 'check' phase.
2023-04-22gnu: zig: Fix build.Josselin Poiret
* gnu/packages/patches/zig-do-not-link-against-librt.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/zig.scm (zig-0.10): Use it. Also force LLVM to be dynamically linked, and set up the CC env variable. (zig-0.9): Also use the above patch. Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-22gnu: prusa-slicer: Update to 2.5.2.Guillaume Le Vaillant
* gnu/packages/patches/prusa-slicer-boost-fixes.patch: New file. * gnu/packages/patches/prusa-slicer-fix-tests.patch: New file. * gnu/packages/patches/prusa-slicer-with-cereal-1.3.1.patch: New file. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/engineering.scm (prusa-slicer): Update to 2.5.2. [source]: Use patches. [inputs]: Replace cereal-1.3.0 by cereal.
2023-04-22gnu: libigl: Fix build.Guillaume Le Vaillant
* gnu/packages/engineering.scm (libigl)[inputs]: Add tbb.
2023-04-22gnu: embree: Update to 3.13.5.Guillaume Le Vaillant
* gnu/packages/graphics.scm (embree): Update to 3.13.5.
2023-04-22gnu: python-genshi: Update to 0.7.7.Andreas Enge
* gnu/packages/python-web.scm (python-genshi): Update to 0.7.7.
2023-04-22gnu: python-stdnum: Update to 1.18.Andreas Enge
* gnu/packages/finance.scm (python-stdnum): Update to 1.18.
2023-04-22Merge remote-tracking branch 'origin/master' into core-updatesAndreas Enge
2023-04-21gnu: python-cffsubr: Depend on python-afdko@3.6.1.Ludovic Courtès
This removes the dependency of GNOME on Java: gnome -> font-abattis-cantarell -> ... -> openjdk Discussed at <https://lists.gnu.org/archive/html/guix-devel/2022-10/msg00226.html>. * gnu/packages/fontutils.scm (python-cffsubr)[inputs]: Switch to PYTHON-AFDKO-3.6.1.
2023-04-21gnu: python-afdko: Add version 3.6.1.Ludovic Courtès
* gnu/packages/fontutils.scm (python-afdko-3.6.1): New variable.
2023-04-21gnu: libotr: Fix compilation with glibc 2.35.Ludovic Courtès
* gnu/packages/messaging.scm (libotr)[source]: Add 'snippet'.
2023-04-21Revert "gnu: lxqt-admin: Fix path for timezone file."Leo Famulari
The timezone database should not be depended on by packages, but rather found at runtime in the environment. Otherwise, this package will eventually report the incorrect time, because time zones change regularly. This reverts commit 99c1c7a30c59c3514a4ced6e0cad0e5c2860331d.
2023-04-21gnu: ghc-9.0: Make testsuite compatible with Python 3.10.Lars-Dominik Braun
* gnu/packages/haskell.scm (ghc-9.0)[native-inputs]: Add patch and snippet to ghc-testsuite input.
2023-04-21home: services: openssh: Add configuration option for jump proxiesSaku Laesvuori
Add a new 'proxy' field to openssh-host to allow ProxyCommand or ProxyJump, but not both, to be configured. Configuring both would cause the serialization order to determine which one is used. Deprecate the 'proxy-command' field because the 'proxy' field replaces it. * gnu/home/services/ssh.scm (proxy-jump->string, proxy-command-or-jump-list?, serialize-proxy-command-or-jump-list, sanitize-proxy-command): New procedure. (proxy-jump, proxy-command): New record type. (openssh-host)[proxy-command]: Mark field as deprecated because OpenSSH can't have ProxyCommand and ProxyJump configured at the same time. * doc/guix.texi (Secure Shell): Update to match the changes to the service. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-21gnu: guile-dsv: Update to 0.5.2.Artyom V. Poptsov
* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.5.2. [native-inputs]: Add "help2man". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-21gnu: Add emacs-gerbil-mode.Juliana Sims
* gnu/packages/emacs-xyz.scm (emacs-gerbil-mode): Add emacs-gerbil-mode. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-21gnu: kicad: Update to 7.0.2.Peter Polidoro
* gnu/packages/engineering.scm (kicad): Update to 7.0.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-21gnu: kdoctools: Compile with docbook-xml@4.5.Andreas Enge
* gnu/packages/kde-frameworks.scm (kdoctools): Use docbook-xml-4.5 instead of docbook-xml.
2023-04-21tests: Fork and exec a new Guile for the marionette REPL.Ludovic Courtès
By merely forking PID 1, details from PID 1 (shepherd) would leak into the marionette process, such as the set of modules in scope and state inherited from the shepherd process (<service> instances, fibers, etc.). Running a fresh Guile instance avoids that. * gnu/tests.scm (marionette-program): New procedure. (marionette-shepherd-service): Change 'start' to use 'make-forkexec-constructor', and run the result of 'marionette-program'.
2023-04-21tests: Use the client 'start-service' procedure.Ludovic Courtès
The previous code worked "by chance": 'start' from (shepherd service) happened to be in scope because the marionette REPL is created by a mere 'primitive-fork', and 'start' happened to kinda work. * gnu/tests/base.scm (run-basic-test): Use 'start-service' from (gnu services herd), not 'start' from (shepherd service), which is not supposed to work. * gnu/tests/install.scm (run-install): Likewise.
2023-04-21services: herd: 'load-services/safe' is synonymous with 'load-services'.Ludovic Courtès
This is a followup to 547965aa27b6a09cadf42130b7ec7db3f1aee61f. * gnu/services/herd.scm (load-services/safe): Make an alias for 'load-services'.
2023-04-21services: nscd: Depend on syslogd.Ludovic Courtès
This gets rid of nscd debug messages on the console at boot time. * gnu/services/base.scm (nscd-shepherd-service): Add dependency on 'syslogd'.
2023-04-21services: postgresql: Add default package.Ludovic Courtès
* gnu/services/databases.scm (<postgresql-configuration>)[postgresql]: Add default value, moved from... (postgresql-service-type)[default-value]: ... here.
2023-04-21services: knot: Add 'configuration' action.Ludovic Courtès
* gnu/services/dns.scm (knot-shepherd-service): Add 'actions' field.
2023-04-21services: rsync: Add 'configuration' action.Ludovic Courtès
* gnu/services/rsync.scm (rsync-shepherd-service): Add 'actions' field.
2023-04-21services: redis: Add 'configuration' action.Ludovic Courtès
* gnu/services/databases.scm (redis-shepherd-service): Add 'actions' field.
2023-04-21services: mysql: Add 'configuration' action.Ludovic Courtès
* gnu/services/databases.scm (mysql-shepherd-service): Add 'actions' field.
2023-04-21services: postgresql: Add 'configuration' action.Ludovic Courtès
* gnu/services/databases.scm (postgresql-shepherd-service): Add 'actions' field.
2023-04-21services: postgresql: Add the 'postgresql' Shepherd service name.Ludovic Courtès
* gnu/services/databases.scm (postgresql-shepherd-service): Add 'postgresql' to 'provision'.
2023-04-21gnu: freerdp: Update to 2.2.0 [security fixes].Maxim Cournoyer
This fixes CVE-2022-39316, CVE-2022-39317, CVE-2022-39318, CVE-2022-39319, CVE-2022-39320, CVE-2022-41877, CVE-2022-39347, CVE-2022-39282, CVE-2022-39283, CVE-2021-41159 and CVE-2021-41160. * gnu/packages/rdesktop.scm (freerdp): Update to 2.2.0. [arguments]: Use gexps. Do not set DOCBOOKXSL_DIR in #:configureflags.
2023-04-21gnu: freerdp: Update to 2.2.0 [security fixes].Maxim Cournoyer
This fixes CVE-2022-39316, CVE-2022-39317, CVE-2022-39318, CVE-2022-39319, CVE-2022-39320, CVE-2022-41877, CVE-2022-39347, CVE-2022-39282, CVE-2022-39283, CVE-2021-41159 and CVE-2021-41160. * gnu/packages/rdesktop.scm (freerdp): Update to 2.2.0. [arguments]: Use gexps. Do not set DOCBOOKXSL_DIR in #:configureflags.
2023-04-21services: syslog: Log auth.info to /var/log/secure in default configuration.Maxim Cournoyer
This causes authentication failures such as those generated by SSH brute force attacks to appear in /var/log/secure, which is picked up by tools such as fail2ban. * gnu/services/base.scm (%default-syslog.conf): Add a auth.info selector for the /var/log/secure log. Series-to: 62802@debbugs.gnu.org
2023-04-21services/syslog: Strip leading white space indent in syslog.conf.Maxim Cournoyer
This is a cosmetic change. * gnu/services/base.scm (%default-syslog.conf): Add a comment referencing the documentation. Strip the extraneous leading trailing white space indent.
2023-04-21services: syslog: Add a reload action.Maxim Cournoyer
* gnu/services/base.scm (syslog-service-type) [actions]: Add a reload action. * doc/guix.texi (Base Services): Document it.
2023-04-21services: syslog: Move configuration to /etc/syslog.conf.Maxim Cournoyer
Having the configuration live at a static location makes it possible to hot-reload it. * gnu/services/base.scm (syslog.conf): New variable. (syslog-etc, syslog-shepherd-service): New procedures. (syslog-service-type): Rewrite using the above new variable and procedures, extending etc-service-type with its configuration file.
2023-04-21gnu: libxml++: Remove fix-documentation phase.Maxim Cournoyer
* gnu/packages/gnome.scm (libxml++) [arguments]: Delete field.
2023-04-21gnu: opensp: Fix build.Maxim Cournoyer
This is a follow up commit to b84d0b81b2. * gnu/packages/xml.scm (opensp) [arguments]: Properly quote.
2023-04-21gnu: bppsuite: Update to 2.4.1.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bppsuite): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build. [inputs]: Use list. [home-page]: Changed to github page.
2023-04-21gnu: bpp-popgen: Update to 2.4.1.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bpp-popgen): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build. [home-page]: Changed to new host Université Claude-Bernard Lyon 1.
2023-04-21gnu: Add maffilter.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (maffilter): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-21gnu: tensorflow: Adjust for Python 3.10 compatibility.Ricardo Wurmus
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Replace build phase 'python3.9-compatibility with 'python3.10-compatibility; patch for move from "collections" to "collections.abc"; add well-meaning but potentially reckless patch to remove overwrite error for __or__ and __ror__ methods; adjust farmhash sources to build with GCC 11; do not use distutils.sysconfig.
2023-04-21gnu: python-protobuf-3.6: Patch for Python 3.10.Ricardo Wurmus
* gnu/packages/protobuf.scm (python-protobuf-3.6)[arguments]: Patch collections import. [native-inputs]: Add python-setuptools-for-tensorflow.
2023-04-21gnu: python-setuptools-for-tensorflow: Patch for Python 3.10 compatibility.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-setuptools-for-tensorflow)[arguments]: Patch collections imports; remove wininst support.
2023-04-21gnu: grpc-1.16.1: Correct input modifications.Ricardo Wurmus
abseil-cpp is not part of the native-inputs but of the inputs. * gnu/packages/rpc.scm (grpc-1.16.1)[native-inputs]: Only replace protobuf. [inputs]: Replace abseil-cpp.
2023-04-21gnu: python-grpcio: Rebuild Cythonized source files.Ricardo Wurmus
* gnu/packages/rpc.scm (python-grpcio)[source]: Delete generated cpp file. [build-system]: Use pyproject-build-system. [arguments]: Patch setup.py to add grpc headers to search path. [inputs]: Replace abseil-cpp with abseil-cpp-20211102.0; add grpc-for-python-grpcio. [native-inputs]: Add python-cython.
2023-04-21gnu: Add grpc-for-python-grpcio.Ricardo Wurmus
* gnu/packages/rpc.scm (grpc-for-python-grpcio): New variable.