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2023-07-16gnu: tpacpi-bat: Update to 3.2....* gnu/packages/linux.scm (tpacpi-bat): Update to 3.2. [arguments]: Don't explicitly return #t from phases. linux tpacpi-bat Tobias Geerinckx-Rice
2023-07-19tests: lightdm: Bump timeout waiting for screen text to 60 seconds....This is to avoid non-deterministic failures on slower machines. * gnu/tests/lightdm.scm (run-lightdm-test) <wait-for-screen-text>: Bump timeout to 60 s (from the default 30 s). Maxim Cournoyer
2023-07-19tests: xvnc: Fix 'gdm auto-suspend is disabled' test....This failure is another collateral from commit a09c7da ("tests: Fork and exec a new Guile for the marionette REPL."), which isolated the marionette evaluation environment from that of the host. * gnu/tests/vnc.scm (run-xvnc-test): Move the (guix build utils) import to... ["gdm auto-suspend is disabled"]: ... inside the marionette-eval of this test. Complete comment. Reported-by: Bruno Victal <mirai@makinata.eu> Maxim Cournoyer
2023-07-19tests: xvnc: Group up GDM test and use GNU Ocrad instead of Tesseract....* gnu/tests/vnc.scm (run-xvnc-test): Group up GDM test. Use GNU Ocrad. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Bruno Victal
2023-07-19tests: gdm: Prefer OCR to delay....* gnu/tests/gdm.scm (run-gdm-test): Use wait-for-screen-text instead of sleep. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Bruno Victal
2023-07-19marionette: Allow passing custom OCR arguments....* gnu/build/marionette.scm (%default-ocrad-arguments): New variable. (invoke-ocrad-ocr, invoke-tesseract-ocr, marionette-screen-text) [ocr-arguments]: New argument. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Bruno Victal
2023-07-19gnu: Add r-qfeatures....* gnu/packages/bioconductor.scm (r-qfeatures): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-spectra....* gnu/packages/bioconductor.scm (r-spectra): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-rtcgatoolbox....* gnu/packages/bioconductor.scm (r-rtcgatoolbox): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-gwastools....* gnu/packages/bioconductor.scm (r-gwastools): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-beadarray....* gnu/packages/bioconductor.scm (r-beadarray): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-beaddatapackr....* gnu/packages/bioconductor.scm (r-beaddatapackr): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-ucell....* gnu/packages/bioconductor.scm (r-ucell): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-tcgautils....* gnu/packages/bioconductor.scm (r-tcgautils): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-globalancova....* gnu/packages/bioconductor.scm (r-globalancova): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-seqarray....* gnu/packages/bioconductor.scm (r-seqarray): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-nebulosa....* gnu/packages/bioconductor.scm (r-nebulosa): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-ggtreeextra....* gnu/packages/bioconductor.scm (r-ggtreeextra): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-survcomp....* gnu/packages/bioconductor.scm (r-survcomp): New variable. Ricardo Wurmus
2023-07-19gnu: r-missmethyl: Move out of experiments section....* gnu/packages/bioconductor.scm (r-missmethyl): Move from experiments section to packages section. Ricardo Wurmus
2023-07-19gnu: r-cellid: Move out of experiments section....* gnu/packages/bioconductor.scm (r-cellid): Move from experiments section to packages section. Ricardo Wurmus
2023-07-19gnu: Add r-mfuzz....* gnu/packages/bioconductor.scm (r-mfuzz): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-raggedexperiment....* gnu/packages/bioconductor.scm (r-raggedexperiment): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-spatialexperiment....* gnu/packages/bioconductor.scm (r-spatialexperiment): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-singscore....* gnu/packages/bioconductor.scm (r-singscore): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-plyranges....* gnu/packages/bioconductor.scm (r-plyranges): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-tkwidgets....* gnu/packages/bioconductor.scm (r-tkwidgets): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-dyndoc....* gnu/packages/bioconductor.scm (r-dyndoc): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-genomicdatacommons....* gnu/packages/bioconductor.scm (r-genomicdatacommons): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-snprelate....* gnu/packages/bioconductor.scm (r-snprelate): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-enhancedvolcano....* gnu/packages/bioconductor.scm (r-enhancedvolcano): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-logistf....* gnu/packages/cran.scm (r-logistf): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-formula-tools....* gnu/packages/cran.scm (r-formula-tools): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-operator-tools....* gnu/packages/cran.scm (r-operator-tools): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-uchardet....* gnu/packages/cran.scm (r-uchardet): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-gwasexacthw....* gnu/packages/cran.scm (r-gwasexacthw): New variable. Ricardo Wurmus
2023-07-19gnu: Add r-gsva....* gnu/packages/bioconductor.scm (r-gsva): New variable. Ricardo Wurmus
2023-07-19gnu: cl-usocket: Update to 0.8.6....* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.6. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Andre A. Gomes
2023-07-19gnu: cl-ndebug: Update to 0.2.0....* gnu/packages/lisp-xyz.scm (sbcl-ndebug): Update to 0.2.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Andre A. Gomes
2023-07-19gnu: cl-lisp-unit2: Update to 0.9.4-0.b5aa17b....* gnu/packages/lisp-check.scm (sbcl-lisp-unit2): Update to 0.9.4-0.b5aa17b. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Andre A. Gomes
2023-07-19gnu: cl-array-utils: Update to 1.2.0-0.29da8fc....* gnu/packages/lisp-xyz.scm (sbcl-array-utils): Update to 1.2.0-0.29da8fc. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Andre A. Gomes
2023-07-19gnu: commencement: hurd-minimal-boot0: Update to 0.9.git20230216....* gnu/packages/commencement.scm (hurd-minimal-boot0): Remove redundant let and package-with-bootstrap-guile. [name]: New field; give proper name. [version]: New field. [source]: Update to 0.9.git20230216, using hurd-headers-boot0' source. [inputs]: Add autoconf-boot0, automake-boot0, gnumach-headers-boot0. [native-inputs]: Add autoconf-boot0, automake-boot0, and gnumach-headers-boot0. * gnu/packages/commencement.scm (hurd-version-boot0, hurd-source-boot0): Remove. Janneke Nieuwenhuizen
2023-07-19gnu: commencement: hurd-headers-boot0: Update to 0.9.git20230216....* gnu/packages/commencement.scm (hurd-headers-boot0): Remove redundant outer let and package-with-bootstrap-guile. [name]: New field; give proper name. [version]: New field. [source]: Update to 0.9.git20230216, using git-fetch-from-tarball. [inputs]: Add autoconf-boot0, automake-boot0, gnumach-headers-boot0. Janneke Nieuwenhuizen
2023-07-19gnu: mig: Use git-fetch....Now that we have `git-fetch-from-tarball' to break the cycle in commencement for git-fetch sources, we can finally update mig to use git-fetch to allow `--with-commit' builds. * gnu/packages/hurd.scm (mig)[source]: Use git-fetch again. * gnu/packages/commencement.scm (mig-boot0)[source]: Use git-fetch-from-tarball accordingly. Josselin Poiret
2023-07-19gnu: commencement: mig-boot0: Update to 1.8+git20230520....* gnu/packages/commencement.scm (mig-boot0): Remove redundant outer let. [name]: New field, give proper name. [version]: New field [source]: Update to 1.8+git20230520. [native-inputs]: Add autoconf-boot0, automake-boot0. [inputs]: Add gnumach-headers-boot0. Janneke Nieuwenhuizen
2023-07-19gnu: commencement: gnumach-headers-boot0: Update to 1.8+git20221224....* gnu/packages/commencement.scm (gnumach-headers-boot0)[name]: New field; give proper name. [source]: Update to 1.8+git20221224, using git-fetch-from-tarball. [native-inputs]: Add autoconf-boot0, automake-boot0, texinfo-boot0. [arguments]: Add 'patch-compat' phase to allow building hurd-minimal etc, with our out-of-date bootstsrap binaries. Janneke Nieuwenhuizen
2023-07-19gnu: commencement: Add git-fetch-from-tarball utility....* gnu/packages/commencement.scm (git-fetch-from-tarball): New procedure. Ludovic Courtès
2023-07-19gnu: commencement: Add automake-boot0....* gnu/packages/commencement.scm (automake-boot0): New variable. Janneke Nieuwenhuizen
2023-07-19gnu: commencement: Add autoconf-boot0....* gnu/packages/commencement.scm (autoconf-boot0): New variable. Janneke Nieuwenhuizen
2023-07-16gnu: python-wand: Fix build....Fixes <https://issues.guix.gnu.org/64350>. * gnu/packages/python-xyz.scm (python-wand)[arguments]<#:phases>: Pass tests? to 'check. Reported-by: Thorsten Wilms <t_w_@freenet.de> Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Hilton Chain