| Age | Commit message (Expand) | Author |
|---|
| 2021-12-03 | gnu: Remove python2-biom-format....There are no users of this variant, and the current version of biom-format
does not support Python 2.
* gnu/packages/bioinformatics.scm (python2-biom-format): Remove variable.
(python-biom-format)[properties]: Remove field.
| Ricardo Wurmus |
| 2021-12-03 | gnu: r-flowclust: Add gsl....* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally
committed comment character.
| Ricardo Wurmus |
| 2021-12-03 | gnu: icecat: Remove vestigial icecat-78-makeicecat.patch....This is a followup to commit a63231003e7bbeafb0110b077788e47e78685f20.
* gnu/packages/patches/icecat-78-makeicecat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Mark H Weaver |
| 2021-12-03 | gnu: cuirass: Update to 1.1.0-6.df8837c....* gnu/packages/ci.scm (cuirass): Update to 1.1.0-6.df8837c.
| Mathieu Othacehe |
| 2021-12-03 | gnu: python-pandocfilters: Update to 1.5.0....* gnu/packages/textutils.scm (python-pandocfilters): Update to 1.5.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| jgart |
| 2021-12-03 | gnu: icecat: Fix CVE-2021-43527....* gnu/packages/patches/icecat-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat-source): Apply it.
| Mark H Weaver |
| 2021-12-03 | gnu: nss: Fix CVE-2021-43527 via graft....* gnu/packages/patches/nss-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/nss.scm (nss/fixed): New variable
(nss)[replacement]: New field.
| Mark H Weaver |
| 2021-12-02 | gnu: openjdk16: Use MAKE-FILE-WRITABLE....* gnu/packages/java.scm (openjdk16)[arguments]: Do not shell out to "chmod".
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add openjdk17....* gnu/packages/java.scm (openjdk17): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Arne Babenhauserheide |
| 2021-12-02 | gnu: python2-decorator: Downgrade to 4.3.0...* gnu/packages/python-xyz.scm (python2-decorator): Keep at 4.3.0.
(python-decorator)[properties]: Add python2-variant.
| Ricardo Wurmus |
| 2021-12-02 | gnu: ribodiff: Remove trailing #T....* gnu/packages/bioinformatics.scm (ribodiff)[arguments]: Remove trailing #T
from build phase.
| Ricardo Wurmus |
| 2021-12-02 | gnu: ribodiff: Disable broken test....* gnu/packages/bioinformatics.scm (ribodiff)[arguments]: Add build phase
'disable-plot-test.
| Ricardo Wurmus |
| 2021-12-02 | gnu: python2-statsmodels: Downgrade to 0.9.0....* gnu/packages/statistics.scm (python2-statsmodels): Downgrade to 0.9.0.
| Ricardo Wurmus |
| 2021-12-02 | gnu: khmer: Fix build with Python 3.8....* gnu/packages/bioinformatics.scm (khmer)[source]: Remove trailing #T.
[arguments]: Remove trailing #T from build phases; add build phase
'python-3.8-compatibility.
| Ricardo Wurmus |
| 2021-12-02 | gnu: python-biom-format: Update to 2.1.10....* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.10.
[source]: Simplify snippet.
[arguments]: Add phase 'relax; remove trailing #T from other build phases.
[propagated-inputs]: Add python-anndata; replace python-pandas-0.25 with
python-pandas.
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add trayer-srg....* gnu/packages/wm.scm (trayer-srg): New variable.
Co-authored-by: Disseminate Dissent <disseminatedissent@protonmail.com>
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| jgart |
| 2021-12-02 | gnu: pardre: Update to 2.2.5....* gnu/packages/bioinformatics.scm (pardre): Update to 2.2.5.
[arguments]: Remove trailing #T and update comment about tests.
| Ricardo Wurmus |
| 2021-12-02 | gnu: pardre: Use C++ bindings for MPI....* gnu/packages/bioinformatics.scm (pardre)[inputs]: Replace openmpi with
openmpi-c++.
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add openmpi-c++....* gnu/packages/mpi.scm (openmpi-c++): New variable.
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add libconfini....* gnu/packages/cpp.scm (libconfini): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Liliana Marie Prikler |
| 2021-12-02 | gnu: shotcut: Update to 21.10.31....* gnu/packages/video.scm (shotcut): Update to 21.10.31.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vinicius Monego |
| 2021-12-02 | gnu: kdenlive: Update to 21.08.3....* gnu/packages/kde.scm (kdenlive): Update to 21.08.3.
[arguments]: Pass "-DBUILD_TESTING=off" to #:configure-flags as tests are
currently disabled.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vinicius Monego |
| 2021-12-02 | gnu: mlt: Update to 7.2.0....* gnu/packages/video.scm (mlt): Update to 7.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vinicius Monego |
| 2021-12-02 | gnu: ccls: Update to 0.20210330....* gnu/packages/cpp.scm (ccls): Update to 0.20210330.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| jgart |
| 2021-12-02 | gnu: guile-udev: Update to 0.2.0...* gnu/packages/guile-xyz.scm (guile-udev): Update to 0.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Artyom V. Poptsov |
| 2021-12-02 | gnu: python-ipython: Update to 7.20.0....* gnu/packages/python-xyz.scm (python-ipython): Update to 7.20.0.
| Ricardo Wurmus |
| 2021-12-02 | gnu: python-ipython: Remove trailing #T....* gnu/packages/python-xyz.scm (python-ipython)[arguments]: Remove trailing #T
from build phases.
| Ricardo Wurmus |
| 2021-12-02 | gnu: yggdrasil: Simplify build phases....* gnu/packages/networking.scm (yggdrasil)[arguments]: Rewrite custom
'build phase reusing go-build-system 'build phase. Remove custom
'install phase.
| Efraim Flashner |
| 2021-12-02 | gnu: go-golang-zx2c4-com-wireguard: Fix downloading source....* gnu/packages/golang.scm (go-golang-zx2c4-com-wireguard)[source]:
Adjust commit string in git-reference.
| Efraim Flashner |
| 2021-12-02 | gnu: go-github-com-vividcortex-ewma: Adjust import-path....* gnu/packages/golang.scm (go-github-com-vividcortex-ewma)[arguments]:
Adjust import-path to location other go packages expect it to be.
| Efraim Flashner |
| 2021-12-02 | gnu: guix: Update to 8cc099b....* gnu/packages/package-management.scm (guix): Update to 8cc099b.
| Ludovic Courtès |
| 2021-12-02 | gnu: Add python-mygene....* gnu/packages/bioinformatics.scm (python-mygene): New variable.
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add python-biothings-client....* gnu/packages/bioinformatics.scm (python-biothings-client): New variable.
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add r-scdblfinder....* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
| Ricardo Wurmus |
| 2021-12-02 | Revert "gnu: godot: Update to 3.4."...This reverts commit dd4365efa1c6fb609de9bd7cd10f9c82e064aed4.
We reverted this commit because it broke the operation of the only
package in Guix that depends on Godot, SuperStarfighter:
https://debbugs.gnu.org/cgi/bugreport.cgi?bug=52233#20
| Leo Famulari |
| 2021-12-02 | gnu: cl-tooter: Update to 1.0.0-3.ec97bee....* gnu/packages/lisp-xyz.scm (cl-tooter): Update to 1.0.0-3.ec97bee.
Signed-off-by: Leo Famulari <leo@famulari.name>
| cage |
| 2021-12-02 | gnu: cl-i18n: Update to 0.5.1-1.4216fe9....* gnu/packages/lisp-xyz.scm (cl-i18n): Update to 0.5.1-1.4216fe9.
Signed-off-by: Leo Famulari <leo@famulari.name>
| cage |
| 2021-12-02 | gnu: godot: Update to 3.4....* gnu/packages/game-development.scm (godot): Update to 3.4.
[source]: Add new bundled dependencies to the origin snippet.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Andy Tai |
| 2021-12-01 | gnu: linux-libre 4.19: Update to 4.19.219....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.219.
(linux-libre-4.19-pristine-source): Update hash.
| Leo Famulari |
| 2021-12-01 | gnu: linux-libre 5.4: Update to 5.4.163....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.163.
(linux-libre-5.4-pristine-source): Update hash.
| Leo Famulari |
| 2021-12-01 | gnu: linux-libre 5.10: Update to 5.10.83....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.83.
(linux-libre-5.10-pristine-source): Update hash.
| Leo Famulari |
| 2021-12-01 | gnu: linux-libre: Update to 5.15.6....* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.6.
(linux-libre-5.15-pristine-source): Update hash.
| Leo Famulari |
| 2021-12-02 | gnu: Remove couger....This package has been moved to the Guix Past channel.
* gnu/packages/bioinformatics.scm (couger): Remove variable.
| Ricardo Wurmus |
| 2021-12-02 | gnu: randomjungle: Fix compatibility errors....* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase
'fix-compatibility-errors to patch type errors.
| Ricardo Wurmus |
| 2021-12-01 | gnu: icecat: Remove leftovers of release 78....No longer required as icedove is now based on the 91 branch.
* gnu/packages/gnuzilla.scm (mozilla-78-compare-locales): Remove.
(all-mozilla-78-locales): Remove.
(%icecat-78-version): Remove.
(icecat-78-source): Remove.
| Jonathan Brielmaier |
| 2021-12-01 | gnu: icedove: Update to 91.3.2....The profile folder moved from `~/.icedove` to `~/.thunderbird`. You may
need to migrate (copy) your profile over.
* gnu/packages/gnuzilla.scm (icedove): Update to 91.3.2.
[source]: Switch back to icecat-source.
[arguments]: `obj-x86_64-pc-linux-gnu` folder is now generated during
build, so it can't deleted in front. Remove surounding `'` from
MOZ_DEDICATED_PROFILES to follow source code. MOZ_APP_BASENAME and
MOZ_APP_DISPLAYNAME are no longer set in `comm/mail/confvars.sh`. Update
path of `customizeToolbar.js`.
Delete `'bootstrap` phase and no longer set AUTOCONF variable as the
autoconf build part was removed. Set MACH_USE_SYSTEM_PYTHON and
MOZ_APP_NAME, the latter is the binary name.
`--enable-calendar` flag got removed. Use bundled NSS until
core-updates merge.
[inputs]: Update to `icu4c-69` and `nspr-4.32`. Use bundled NSS for now.
[native-inputs]: Switch to comm-esr91 branch. Remove autoconf, add m4.
Update rust and cargo to 1.51. Use `rust-cbindgen-0.19`.
| Jonathan Brielmaier |
| 2021-12-01 | gnu: Add nspr@4.32....Required for icecat/icedove 91.
* gnu/packages/nss.scm (nspr-4.32): New variable.
| Jonathan Brielmaier |
| 2021-12-01 | gnu: emacs-citar: Remove unnecessary input....* gnu/packages/emacs-xyz.scm (emacs-citar)[propagated-inputs]: Remove emacs-helm-bibtex.
| Nicolas Goaziou |
| 2021-12-01 | gnu: bullet: Update to 3.17....* gnu/packages/game-development.scm (bullet): Update to 3.17.
[arguments]<#:configure-flags>: Disable access to third-party libs.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Andy Tai |
| 2021-12-01 | gnu: Update Trezor support....* gnu/packages/patches/python-trezor-agent-fix-argv0.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Apply previous removal.
* gnu/packages/finance.scm (python-trezor-agent): Update to 0.14.4.
[source]: Remove now useless patch.
(python-mnemonic): Update to 0.20.
(python-trezor): Update to 0.12.4
(trezor-agent): Update to 0.11.0-1.
[source]: Add file-name field.
[arguments]: Remove trailing #T in phases.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Attila Lendvai |
